View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13778_low_1 (Length: 606)
Name: NF13778_low_1
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13778_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 589
Target Start/End: Complemental strand, 29838576 - 29838007
Alignment:
| Q |
20 |
gaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaagcatttaccaatcattttgtag |
119 |
Q |
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| T |
29838576 |
gaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaagcatttaccaatctttttgtag |
29838477 |
T |
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| Q |
120 |
tattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgac |
219 |
Q |
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| T |
29838476 |
tattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgac |
29838377 |
T |
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| Q |
220 |
atcaaatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattct |
319 |
Q |
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| T |
29838376 |
atcaaatgcaaaaccgacaacacctcataccaagcattagacatggttgtttcctgtaaagagcgcacaaaagtaaccggaacaaattgatcagcattct |
29838277 |
T |
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| Q |
320 |
tctctataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtatt |
419 |
Q |
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| T |
29838276 |
tctctataggaagtaaattaaactcaaaaatatgtatgaattttagaaggtacctctttttcatcttcttggttcatccaaacaaactgtactttgtatt |
29838177 |
T |
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| Q |
420 |
gtaaatgacttcctacaccataaagataagtaataataatcagtactttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggt |
519 |
Q |
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| T |
29838176 |
gtaaatgacttcctacaccataaagataagtaataataatcagtattttgtcttacagagagcatacatcaaacaccggggtctagcacaagtggttggt |
29838077 |
T |
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| Q |
520 |
gcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatataccgtctttaact |
589 |
Q |
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| T |
29838076 |
gcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatttaccgtctttaact |
29838007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 134 - 275
Target Start/End: Original strand, 34628143 - 34628284
Alignment:
| Q |
134 |
taccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaaattagcctttgacagtaatagcattgacatcaaatgcaaaac |
233 |
Q |
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|||| ||||||||| | |||||||||| || |||||| ||||||||| || | |||||||||| ||| || ||||| ||| |||||| ||||| || |
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| T |
34628143 |
taccttctgatacttttggctgatgaccatcggtggatgttcttggaagaagtaataaattagcctgtgatagcaatagtgttgccatcaagtgcaagac |
34628242 |
T |
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| Q |
234 |
cgacaacacctcataccaagcattagacatggttgtttcctg |
275 |
Q |
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| T |
34628243 |
tgacaacacttcataccaagcattagacatggctgtttcctg |
34628284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 34628391 - 34628451
Alignment:
| Q |
370 |
tacctctttttcatcttcttggttcatccaaacaaactgtactttgtattgtaaatgactt |
430 |
Q |
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| T |
34628391 |
tacctctgcttcatcctcctgattcatccaaacaaattgtactttgtattgtaaatgactt |
34628451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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