View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13778_low_7 (Length: 346)

Name: NF13778_low_7
Description: NF13778
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13778_low_7
NF13778_low_7
[»] chr8 (9 HSPs)
chr8 (14-332)||(2520192-2520504)
chr8 (29-98)||(30112499-30112569)
chr8 (46-98)||(31658857-31658909)
chr8 (14-98)||(1445357-1445442)
chr8 (43-98)||(40694236-40694291)
chr8 (43-98)||(40696645-40696700)
chr8 (50-98)||(8251240-8251288)
chr8 (55-97)||(30654263-30654305)
chr8 (43-95)||(2152328-2152379)
[»] chr3 (9 HSPs)
chr3 (14-98)||(45261368-45261452)
chr3 (40-98)||(8825444-8825501)
chr3 (28-98)||(35455312-35455382)
chr3 (14-91)||(17003635-17003712)
chr3 (43-98)||(32211878-32211933)
chr3 (38-98)||(43320215-43320275)
chr3 (61-100)||(28695544-28695583)
chr3 (46-97)||(40345022-40345073)
chr3 (39-98)||(55452433-55452495)
[»] chr2 (5 HSPs)
chr2 (227-325)||(37505576-37505674)
chr2 (43-100)||(3268800-3268857)
chr2 (43-100)||(3269359-3269416)
chr2 (43-100)||(3269918-3269975)
chr2 (158-200)||(37505440-37505482)
[»] chr6 (2 HSPs)
chr6 (46-98)||(180344-180396)
chr6 (55-95)||(7633388-7633428)
[»] chr5 (7 HSPs)
chr5 (39-97)||(6688792-6688850)
chr5 (40-98)||(10656494-10656552)
chr5 (41-100)||(73568-73627)
chr5 (39-98)||(3629294-3629353)
chr5 (40-97)||(19296243-19296300)
chr5 (46-100)||(18705001-18705055)
chr5 (41-98)||(3257296-3257353)
[»] scaffold0836 (1 HSPs)
scaffold0836 (39-98)||(3026-3085)
[»] chr7 (9 HSPs)
chr7 (46-97)||(41508105-41508156)
chr7 (43-97)||(46341502-46341556)
chr7 (43-97)||(2195810-2195864)
chr7 (39-97)||(12506713-12506771)
chr7 (46-98)||(14650191-14650243)
chr7 (43-98)||(37048579-37048634)
chr7 (39-97)||(12485281-12485339)
chr7 (29-98)||(20949077-20949146)
chr7 (130-159)||(27320293-27320322)
[»] chr1 (8 HSPs)
chr1 (43-98)||(39150269-39150324)
chr1 (14-98)||(9851872-9851956)
chr1 (14-98)||(28469938-28470022)
chr1 (18-90)||(31152448-31152521)
chr1 (45-98)||(34702206-34702259)
chr1 (46-98)||(17988375-17988427)
chr1 (39-97)||(948227-948285)
chr1 (61-98)||(24547430-24547467)
[»] chr4 (5 HSPs)
chr4 (39-98)||(16572256-16572315)
chr4 (241-307)||(27932670-27932736)
chr4 (157-200)||(27932519-27932562)
chr4 (43-98)||(33721704-33721759)
chr4 (40-98)||(42312494-42312553)
[»] scaffold1809 (1 HSPs)
scaffold1809 (39-100)||(582-643)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-98)||(154344-154392)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 2520192 - 2520504
Alignment:
Q  14 atatttaaaaaaggaacattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa-ttgaaccaatttta 112  Q
    ||||||||||||||||||||||| || | |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||     
T  2520192 atatttaaaaaaggaacattaaatggaggtagaaa-gtctcttaagcaataactacatcttaaaatttgtgacattttcttataaattgaaccaattttt 2520290  T
Q  113 nnnnnnnnnnnnngaaatttttcttataataaggacgggagggagtatctaattgaggaggaggagcggtctatattttcaaggagtcaacgagtaaagg 212  Q
                  |  |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  2520291 ttttttaa------atttttttcttataataaggacgggagggagcatctaattgaggaggaggagctgtctatattttcaaggagtcaatgggtaaagg 2520384  T
Q  213 aaaccccgagagccgaactttctggttgaagagagtaaagttgcatgtggatggaaatcattccgtctagtacctgcaatcaaatccaaagctgtctggg 312  Q
    ||||| |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2520385 aaaccacgagaggcgaactttctaattgaagagagtaaagttgcatgtggatggaaatcattccgtgtagtacctgcaatcaaatccaaagctgtctggg 2520484  T
Q  313 agtccgattccaaagatgat 332  Q
    | ||||||||||||||||||    
T  2520485 aatccgattccaaagatgat 2520504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 30112499 - 30112569
Alignment:
Q  29 acattaaacg-gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||| |||||| |||| ||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  30112499 acattaaacgagggataaaaaaatcttttaagcaataactacaccttaaaatttgtgacattttcttataa 30112569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 31658909 - 31658857
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||| |||| ||||||||||||||||||| |||||||||||||||||||    
T  31658909 aaaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataa 31658857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 1445442 - 1445357
Alignment:
Q  14 atatttaaaaaaggaacattaaacggggatagaaaagtctattaagcaataac-tacatcttaaaatttgtgatattttcttataa 98  Q
    |||| ||||| || |||||||||  ||||||||||||||  |||||||||||| |||| ||||||| |||||| ||||||||||||    
T  1445442 atatctaaaagagaaacattaaatagggatagaaaagtcatttaagcaataacttacaccttaaaagttgtgacattttcttataa 1445357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 40694291 - 40694236
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| ||||||||||| |||| || |||| |||||||||||||||||||    
T  40694291 tagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataa 40694236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 40696645 - 40696700
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| ||||| ||||| ||||||| |||| |||||||||||||||||||    
T  40696645 tagaaaagtcttttaaggaataattacatctaaaaagttgtgatattttcttataa 40696700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 8251288 - 8251240
Alignment:
Q  50 gtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||| ||||||||||| |||| ||||||| |||||||||||||||||||    
T  8251288 gtcttttaagcaataattacaccttaaaagttgtgatattttcttataa 8251240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 30654263 - 30654305
Alignment:
Q  55 ttaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    ||||||||||||||||  |||||| ||||||||||||||||||    
T  30654263 ttaagcaataactacactttaaaagttgtgatattttcttata 30654305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 2152379 - 2152328
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttctta 95  Q
    ||||||||||| ||||| |||||| ||| ||||||| ||||||||||||||||    
T  2152379 tagaaaagtcttttaagtaataac-acaccttaaaaattgtgatattttctta 2152328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 45261452 - 45261368
Alignment:
Q  14 atatttaaaaaaggaacattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||| || |||||||||  ||||||||||||||  |||||||||||||||| ||||||| |||||| ||||||||||||    
T  45261452 atatttaaaagagaaacattaaatagggatagaaaagtcatttaagcaataactacagcttaaaagttgtgacattttcttataa 45261368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 8825444 - 8825501
Alignment:
Q  40 ggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||||||    
T  8825444 ggatagaaaagtcttttaagcaataactacaccttaaaa-ttgtgacattttcttataa 8825501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 35455382 - 35455312
Alignment:
Q  28 aacattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||  ||||||||||||||  ||||||||||| |||| ||||||| |||||| ||||||||||||    
T  35455382 aacattaaatagggatagaaaagtcatttaagcaataattacaccttaaaagttgtgacattttcttataa 35455312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 17003635 - 17003712
Alignment:
Q  14 atatttaaaaaaggaacattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatatttt 91  Q
    |||||||||| || |||||||||  |||||| |||||||  |||||||||||||||| ||||||| |||||| |||||    
T  17003635 atatttaaaagagaaacattaaatagggataaaaaagtcatttaagcaataactacaccttaaaagttgtgacatttt 17003712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 32211878 - 32211933
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||    
T  32211878 tagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataa 32211933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 43320215 - 43320275
Alignment:
Q  38 ggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||| ||||||||||| |||| ||||||| ||| ||||||| |||||| ||||||||||||    
T  43320215 ggggctagaaaagtcttttaaacaataaccacaccttaaaagttgtgacattttcttataa 43320275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 100
Target Start/End: Complemental strand, 28695583 - 28695544
Alignment:
Q  61 aataactacatcttaaaatttgtgatattttcttataatt 100  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  28695583 aataactacacgttaaaatttgtgatattttcttataatt 28695544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 40345022 - 40345073
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    |||||||| ||||||||| |||||| ||||||| |||||| |||||||||||    
T  40345022 aaaagtctcttaagcaatgactacaccttaaaagttgtgacattttcttata 40345073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 55452495 - 55452433
Alignment:
Q  39 gggatagaaaagtctattaagcaataa---ctacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| ||| |||||||||||   |||||| |||||| |||||| ||||||||||||    
T  55452495 gggatagaaaaatcttttaagcaataaaaactacattttaaaagttgtgacattttcttataa 55452433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 325
Target Start/End: Original strand, 37505576 - 37505674
Alignment:
Q  227 gaactttctggttgaagagagtaaagttgcatgtggatggaaatcattccgtctagtacctgcaatcaaatccaaagctgtctgggagtccgattccaa 325  Q
    |||||||||  || ||||||||||||||||||||||||| |||| ||||    ||||| ||||||||||||||||||||||||| || || ||||||||    
T  37505576 gaactttctaattaaagagagtaaagttgcatgtggatgaaaattattctccttagtatctgcaatcaaatccaaagctgtctgagaatcagattccaa 37505674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 3268857 - 3268800
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataatt 100  Q
    ||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||    
T  3268857 tagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataatt 3268800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 3269416 - 3269359
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataatt 100  Q
    ||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||    
T  3269416 tagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataatt 3269359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 3269975 - 3269918
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataatt 100  Q
    ||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||||    
T  3269975 tagaaaagtcttttaggcaataactacaccttaaaagttgtgatattttcttataatt 3269918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 37505440 - 37505482
Alignment:
Q  158 tatctaattgaggaggaggagcggtctatattttcaaggagtc 200  Q
    |||||||||||||||||||||  ||| ||||||||||||||||    
T  37505440 tatctaattgaggaggaggagttgtccatattttcaaggagtc 37505482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 180396 - 180344
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  180396 aaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataa 180344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 7633388 - 7633428
Alignment:
Q  55 ttaagcaataactacatcttaaaatttgtgatattttctta 95  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  7633388 ttaagcaataactacatcttaaaaattgtgtcattttctta 7633428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 6688850 - 6688792
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||||||    
T  6688850 gggatagaaaagtcttttaaacaataactacaccttaaaagttgtgatattttcttata 6688792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 10656494 - 10656552
Alignment:
Q  40 ggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||| |||||| |||||||||||||||||| ||||| || ||||||||||||||||    
T  10656494 ggatagataagtcttttaagcaataactacatcataaaagttttgatattttcttataa 10656552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 73627 - 73568
Alignment:
Q  41 gatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataatt 100  Q
    ||||||||||||| |||||||||||||||| ||||||  |||||||| ||| ||||||||    
T  73627 gatagaaaagtcttttaagcaataactacaccttaaaggttgtgataattttttataatt 73568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 3629294 - 3629353
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||| |||||||| ||||| |||||||||| ||||||| |||||| ||||||||||||    
T  3629294 gggatacaaaagtcttttaagtaataactacaccttaaaagttgtgacattttcttataa 3629353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 19296243 - 19296300
Alignment:
Q  40 ggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    |||||||||||||| ||||||||||||||||  |||||| |||||| ||||| |||||    
T  19296243 ggatagaaaagtcttttaagcaataactacactttaaaagttgtgacatttttttata 19296300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 18705055 - 18705001
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataatt 100  Q
    |||||||| ||||| |||||||||| ||||||| || |||| |||||||||||||    
T  18705055 aaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataatt 18705001  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 3257296 - 3257353
Alignment:
Q  41 gatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||||| |||| |||||  |||  ||||||| |||||||||||||||||||    
T  3257296 gatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttcttataa 3257353  T

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Target: scaffold0836 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 3085 - 3026
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||    
T  3085 gggatagaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 3026  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 41508156 - 41508105
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  41508156 aaaagtcttttaagcaataactacaccttaaaaattgtgatattttcttata 41508105  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 46341556 - 46341502
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    |||| |||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  46341556 tagagaagtcttttaagcaataactacaccttaaaagttgtgatattttcttata 46341502  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 2195864 - 2195810
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    ||||||||||| |||| ||||||||||| ||||||| || |||||||||||||||    
T  2195864 tagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttata 2195810  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 12506771 - 12506713
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    ||||||||||||||| || | ||||||||||| ||||||| |||| |||||||||||||    
T  12506771 gggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttata 12506713  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 14650191 - 14650243
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||| ||| ||||||| |||||||||||| |||||| ||||||||||||    
T  14650191 aaaagtcttttatgcaataaatacatcttaaaaattgtgacattttcttataa 14650243  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 37048634 - 37048579
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||||||||||||||||    
T  37048634 tagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataa 37048579  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 12485339 - 12485281
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    ||||||||||||||| || | ||||||||||| ||||||| |||| ||||||| |||||    
T  12485339 gggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattata 12485281  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 20949146 - 20949077
Alignment:
Q  29 acattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||  |||||| |||| ||  |||||||||||||||| ||||||| || ||| ||||||||||||    
T  20949146 acattaaatagggataaaaaaatcatttaagcaataactacaccttaaaagttatgacattttcttataa 20949077  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 27320322 - 27320293
Alignment:
Q  130 tttttcttataataaggacgggagggagta 159  Q
    ||||||||||||||||||||||||||||||    
T  27320322 tttttcttataataaggacgggagggagta 27320293  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 39150269 - 39150324
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||||||||||||||    
T  39150269 tagaaaagtcttttaagcaataactacaccttaaaagtagtgatattttcttataa 39150324  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 9851872 - 9851956
Alignment:
Q  14 atatttaaaaaaggaacattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||| || |||||||||  |||||| ||| |||  ||||||||||||||||  |||||| |||||| ||||||||||||    
T  9851872 atatttaaaagagaaacattaaatagggataaaaaggtcatttaagcaataactacactttaaaagttgtgacattttcttataa 9851956  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 98
Target Start/End: Complemental strand, 28470022 - 28469938
Alignment:
Q  14 atatttaaaaaaggaacattaaacggggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||| || |||||||||   ||||||||||| |  ||||| |||||||||| |||||||||||||| ||||| ||||||    
T  28470022 atatttaaaagagaaacattaaataaggatagaaaagacatttaagtaataactacaccttaaaatttgtgacatttttttataa 28469938  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 31152521 - 31152448
Alignment:
Q  18 ttaaaaaaggaacattaaacg-gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattt 90  Q
    |||||| || ||||||||| | ||| ||| ||||||| |||||||||||| ||||||||||| |||||||||||    
T  31152521 ttaaaagagaaacattaaatgaggggtagcaaagtcttttaagcaataacgacatcttaaaagttgtgatattt 31152448  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 34702259 - 34702206
Alignment:
Q  45 gaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||| |||||||||||||||| ||||||| ||| |||||||||| ||||    
T  34702259 gaaaagtcttttaagcaataactacaacttaaaagttgagatattttctaataa 34702206  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 17988375 - 17988427
Alignment:
Q  46 aaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||| |||| ||||||||||| ||||||| |||||| ||||||||||||    
T  17988375 aaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 17988427  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 948227 - 948285
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttata 97  Q
    ||||||||||| ||| ||| || ||||||||||||||||| |||| | |||||||||||    
T  948227 gggatagaaaaatcttttaggctataactacatcttaaaaattgtaacattttcttata 948285  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 24547467 - 24547430
Alignment:
Q  61 aataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  24547467 aataactacatcttaaaacttgtgacattttcttataa 24547430  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 16572315 - 16572256
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||||| |||| ||| |||||||||||||||| ||||||| |||||| ||||||||||||    
T  16572315 gggataaaaaattctgttaagcaataactacaccttaaaagttgtgacattttcttataa 16572256  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 27932670 - 27932736
Alignment:
Q  241 aagagagtaaagttgcatgtggatggaaatcattccgtctagtacctgcaatcaaatccaaagctgt 307  Q
    ||||||||||||||||||||||||| ||||||||  || ||||| |||||| ||||  |||||||||    
T  27932670 aagagagtaaagttgcatgtggatgaaaatcattatgtgtagtatctgcaaccaaactcaaagctgt 27932736  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 27932519 - 27932562
Alignment:
Q  157 gtatctaattgaggaggaggagcggtctatattttcaaggagtc 200  Q
    ||||||||||||||||||||||  ||| ||||||||||||||||    
T  27932519 gtatctaattgaggaggaggagttgtccatattttcaaggagtc 27932562  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 33721704 - 33721759
Alignment:
Q  43 tagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    ||||||||||| |||| |||||||||||  |||||| |||||| ||||||||||||    
T  33721704 tagaaaagtcttttaaacaataactacacattaaaaattgtgacattttcttataa 33721759  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 42312494 - 42312553
Alignment:
Q  40 ggatagaaaagtctattaagcaataactacatcttaaaatttgtga-tattttcttataa 98  Q
    |||||||||||||| |||||||||||||| | ||||||| |||||| |||||| ||||||    
T  42312494 ggatagaaaagtcttttaagcaataactataccttaaaagttgtgattatttttttataa 42312553  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 582 - 643
Alignment:
Q  39 gggatagaaaagtctattaagcaataactacatcttaaaatttgtgatattttcttataatt 100  Q
    |||||| |||||||| |||| ||||||||||| ||||||  ||||||  |||||||||||||    
T  582 gggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttataatt 643  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 154392 - 154344
Alignment:
Q  50 gtctattaagcaataactacatcttaaaatttgtgatattttcttataa 98  Q
    |||| |||| ||||||||||| ||||||| |||| ||||||||||||||    
T  154392 gtcttttaaacaataactacaccttaaaagttgtaatattttcttataa 154344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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