View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13779_high_1 (Length: 717)
Name: NF13779_high_1
Description: NF13779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13779_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 33 - 664
Target Start/End: Original strand, 33903228 - 33903841
Alignment:
| Q |
33 |
cttgccatctttgtagttattacattagtgaaggcaatcaacagcacacatatatagacgaatgattaagactggctaactgaattgaataatatggata |
132 |
Q |
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| T |
33903228 |
cttgccatctttgtagtgattacattagtgaaggcaatcaacagcacacatatatagacgaatgattaagactggctaactgaattgaataatatggata |
33903327 |
T |
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| Q |
133 |
ttatatgtcttttcaatgtatgtatatatgtgcatatggaataaagggcataaaataagccagagaagaggcccagccaaacgaataatgttacaattaa |
232 |
Q |
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| T |
33903328 |
ctatatgtcttttcaatgcatgtatatatgtgcatatggaataaagggcataaaataagccagagaagaggcccagccaaacgaataatgttacaattaa |
33903427 |
T |
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| Q |
233 |
ggtcccttcagttactttagtttaattaataatcacatcttagttgttattaagtggatttagatatgctcttggctcttaccgaagtttggtcctgcac |
332 |
Q |
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| T |
33903428 |
ggtcccttca------------------ataatcacatcttagttgttattaagtggacttagatatgctcttggctcttaccgaagtttggtcctgcac |
33903509 |
T |
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| Q |
333 |
caaaaattattggaagaccaaaattacacatcaattacaatagatagatataaactacacaaatacaataataacctatagctcatgaagaatactttta |
432 |
Q |
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| T |
33903510 |
caaaaattattggaagaccaaaattacacatcaattacaatagatagatataaactacacaaatacaataataacctatagctcatgaagaatactttta |
33903609 |
T |
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| Q |
433 |
aaaagtaaacagactaccatgaatatgtgattattcttatctatggtattcttcaatgcttagtcttttgttggtgttgacattgaagatagagaaatat |
532 |
Q |
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| T |
33903610 |
aaaagtaaacagactaccatgaatatgtgattattcttatctatggtattcttcaatgcttagtcttttgttggtgttgacattgaggatagagaaatat |
33903709 |
T |
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| Q |
533 |
aagaagttcttaaagcatgatttagcaatgacagtgaataataatcaatgtgccacacttgtctgtcatactatgatcccatagtccacgcctgtccata |
632 |
Q |
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| T |
33903710 |
aagaacttcttaaagcatgatttagcaatgacagtaaataataatcaatgtgccacacttgtctgtcatgctatgatcccatagtccacgcctgtccata |
33903809 |
T |
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| Q |
633 |
ttaggtcacaccctcctacttattcattttgt |
664 |
Q |
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| T |
33903810 |
ttaggtcacaccctcctacttattcattttgt |
33903841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 663 - 717
Target Start/End: Original strand, 33908232 - 33908286
Alignment:
| Q |
663 |
gtttttacctaaaaataaattacatgttaaccaaaatcggcaagcatttagggat |
717 |
Q |
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| T |
33908232 |
gtttttacctaaaaataaattacatgttaaccaaaatcggcaagcatttagggat |
33908286 |
T |
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