View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13779_high_2 (Length: 439)
Name: NF13779_high_2
Description: NF13779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13779_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33415655 - 33415888
Alignment:
| Q |
1 |
atttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaatacacgaa |
100 |
Q |
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| T |
33415655 |
atttatgggatgattcccatattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaatgaagtatttgtatcaaat--acgaa |
33415752 |
T |
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| Q |
101 |
tttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgac-ttatgatacataaacacaataatataatggtatttgtgtatttga |
199 |
Q |
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| T |
33415753 |
tttgagacatattgaggtttttctttattctctgttgtaagtgaaatttgtgactttatgatagataaacacaataatataatggtatttgtgtatttga |
33415852 |
T |
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| Q |
200 |
gttttgctgttgtaagcaaaccacattttcttaaaa |
235 |
Q |
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| T |
33415853 |
gttttgctgttgtaagaaagccacattttcttaaaa |
33415888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 33410270 - 33410386
Alignment:
| Q |
39 |
ttatagtcacctactaagcatgagtacttg-----aaaaaatgaagtatttgtatcaaatacacgaatttgagacatattgaggtttttctttattctct |
133 |
Q |
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| T |
33410270 |
ttatagtcacctactaagcatgagtacttggaaaaaaaaaacgaagcatttgtatcaaatac--gaatttgagacatattgaggtttttcttcattatcc |
33410367 |
T |
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| Q |
134 |
gttgtaagtgaaatttgtg |
152 |
Q |
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| T |
33410368 |
attgtaagtgaaatgtgtg |
33410386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 33400006 - 33400061
Alignment:
| Q |
19 |
atattgtggtttttagataattatagtcacctactaagcatgagtacttgaaaaaa |
74 |
Q |
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| T |
33400006 |
atattatggtttttaaataattacagtgacctactaagcatgagtacttggaaaaa |
33400061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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