View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13779_low_2 (Length: 371)
Name: NF13779_low_2
Description: NF13779
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13779_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 58 - 339
Target Start/End: Complemental strand, 35343528 - 35343242
Alignment:
| Q |
58 |
ttcacttaattatatgacaattacaaagatttgtgtatt-----ttttcagaattcaaggcctgttattccttcaaactgcccaccagctatgcgagctt |
152 |
Q |
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| T |
35343528 |
ttcacttaattatatgacaattacaaagatttgtgttttttttcttttcagaattcaaggcctgttattccttcaaactgcccaccagctatgcgagctt |
35343429 |
T |
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| Q |
153 |
taatggagcaatgttggtccttgaatccggacaaaaggcctgagttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatgg |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35343428 |
taatggagcaatgttggtccttgaatccggacaaaaggcctgagttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgcgatgg |
35343329 |
T |
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| Q |
253 |
aacgttgaacccgctacaaaacccttgtggacatgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatca |
339 |
Q |
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| T |
35343328 |
aacgttgaccccgctacaaaatccttgtggacttgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatca |
35343242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 58 - 339
Target Start/End: Original strand, 35362428 - 35362714
Alignment:
| Q |
58 |
ttcacttaattatatgacaattacaaagatttgtgtatt-----ttttcagaattcaaggcctgttattccttcaaactgcccaccagctatgcgagctt |
152 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35362428 |
ttcacttaattatatgacaattacaaagatttgtgttttttttcttttcagaattcaaggcctgttattccttcaaactgcccaccagctatgcgagctt |
35362527 |
T |
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| Q |
153 |
taatggagcaatgttggtccttgaatccggacaaaaggcctgagttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatgg |
252 |
Q |
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| T |
35362528 |
taatggagcaatgttggtccttgaatccggacaaaaggcctgagttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgcgatgg |
35362627 |
T |
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| Q |
253 |
aacgttgaacccgctacaaaacccttgtggacatgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatca |
339 |
Q |
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| T |
35362628 |
aacgttgaccccgctacaaaatccttgtggacttgatcataaaaaagggcttcttcattggattcacaagcatagtcctacacatca |
35362714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 99 - 349
Target Start/End: Original strand, 35356432 - 35356682
Alignment:
| Q |
99 |
ttcagaattcaaggcctgttattccttcaaactgcccaccagctatgcgagctttaatggagcaatgttggtccttgaatccggacaaaaggcctgagtt |
198 |
Q |
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| T |
35356432 |
ttcagaattcgaggcctatcattccttcaaactgcccaccagcaatgcgagctttaattgagcaatgttggtccttgaatccggacaaaaggcctgattt |
35356531 |
T |
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| Q |
199 |
ctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatggaacgttgaacccgctacaaaacccttgtggacatgatcataaaaaa |
298 |
Q |
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| T |
35356532 |
ctggcaggttgttaaggtgttggagcaatttgaatcttcgcttgctcgtgatggaacattgaccctgctacaaaacccttgtggccaagatcataaaaaa |
35356631 |
T |
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| Q |
299 |
gggcttcttcattggattcacaagcatagtcctacacatcatagtagtggt |
349 |
Q |
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| T |
35356632 |
gggcttcttcattggattcaaaagcttagtcctgcacatcatagtagtggt |
35356682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 35343604 - 35343561
Alignment:
| Q |
17 |
atgaatggtgaaaccttgttaatatttataatgacatatcattc |
60 |
Q |
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| T |
35343604 |
atgaatggtgaaaccttgttaatatttataatgacatatcattc |
35343561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 35362352 - 35362395
Alignment:
| Q |
17 |
atgaatggtgaaaccttgttaatatttataatgacatatcattc |
60 |
Q |
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| T |
35362352 |
atgaatggtgaaaccttgttaatatttataatgacatatcattc |
35362395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 3821638 - 3821802
Alignment:
| Q |
91 |
tgtattttttcagaattcaaggcctgttattccttcaaactgcccaccagctatgcgagctttaatggagcaatgttggtccttgaatccggacaaaagg |
190 |
Q |
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||||||| ||||||| | |||||| ||||||||||||||||||||||| || ||||||||||| || |||||||||||||| ||| | ||||| || ||| |
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| T |
3821638 |
tgtatttcttcagaaattaaggccagttattccttcaaactgcccacctgcaatgcgagctttgatcgagcaatgttggtcgttgcaaccggataagagg |
3821737 |
T |
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| Q |
191 |
cctgagttctggcaggttgttaaggtgttagaacaatttgaatcttcgcttgctcgtgatggaac |
255 |
Q |
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||||| |||||||| |||| ||||| || || |||||||||||||| ||||| || |||||||| |
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| T |
3821738 |
cctgatttctggcaaattgtcaaggtattggagcaatttgaatcttcccttgcccgcgatggaac |
3821802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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