View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_high_15 (Length: 358)
Name: NF1377_high_15
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 8437570 - 8437894
Alignment:
| Q |
29 |
aaaagataaggatatatctttcgaaaaatgaaatcagtgagacaaatccttaacnnnnnnnnnnnnnnnnnnnngtttatgatcaatacaaacatgaaca |
128 |
Q |
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| T |
8437570 |
aaaagataaggatatatctttcgaaaaatgaaatcagtgagacaaatccttaactatatatctcacaaaaatatgtttatgatcaatacacacatgaaca |
8437669 |
T |
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| Q |
129 |
agcaattgatttgattt------aataagtaacacgaactccttggtacctgagaatttcaccaatgagttcacctttccctgaaccaacatacctacca |
222 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437670 |
agcaattgatttgatttgattttaataagtaacacgaactccttggtacctgagaatttcaccaatgagttcacctttccctgaaccaacatacctacca |
8437769 |
T |
|
| Q |
223 |
gcaatcttaccatctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcatacaactatcattctcatcaccattcatcc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8437770 |
gcaatcttaccatctctaatgaacaaaaaagtaggaacctgaacaacttccatgtccctcaaaaactgcatacaactatcattctcatcaccattcatcc |
8437869 |
T |
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| Q |
323 |
ttgcaaaaataacagtatcattcat |
347 |
Q |
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||||||||||||||||||||||||| |
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| T |
8437870 |
ttgcaaaaataacagtatcattcat |
8437894 |
T |
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