View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1377_high_16 (Length: 348)
Name: NF1377_high_16
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 337
Target Start/End: Complemental strand, 31652799 - 31652562
Alignment:
| Q |
96 |
tgcaacatcaaaattatgaagagcataaacaatcattcttaagatcttttttgaattttaaatacgccaaacaataactttgataatttacctttgcaca |
195 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
31652799 |
tgcaacatcaaaattattaagagcataaacaatccttcttaagatcttttttgaattttaaatacgccaaacaatagctttgaccatttacctttgcaca |
31652700 |
T |
|
| Q |
196 |
aacattatgaaaagtgagatatattgttataagataaatagtaaaataatccttggactttccataaaaattaaaatcaatccttgttgtatataagaat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31652699 |
aacattatgaaaagtgagatatattgttataagataaatagtaaaataatccttggacattccataaaaattaaaatcaatccttgttgtatataataat |
31652600 |
T |
|
| Q |
296 |
tgtctgtctcccaaaagaaaactatagtttgtcggcgttcat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31652599 |
----tgtctcccaaaagaaaactatagtttgtcggcgttcat |
31652562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 43428888 - 43428976
Alignment:
| Q |
7 |
agtgactcactgtaattctgtcaaactgactgtgctaaattttgtagataatccattaaaacatcctgtcctttatgaaatctctgtggtg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43428888 |
agtgactcactgtaattctgtcaaactgactg--ctaaattttgtagataatccattaaaacatcctgtcctttatgaaatctctgtggtg |
43428976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University