View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_high_24 (Length: 274)
Name: NF1377_high_24
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 54 - 240
Target Start/End: Original strand, 6273386 - 6273572
Alignment:
| Q |
54 |
acattttgtgaagagcttagaatatctaaactttgaaatggccaaagatcaaggagaagttcaattattgggtgtaggaggaagtccatttgttcgaagg |
153 |
Q |
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| T |
6273386 |
acattttgtgaagagcttagaatatctaaacgttgaaatggccaaagatcaaggagaagttcaattgttaggtgtaggaggaagcccatttgttcgaagg |
6273485 |
T |
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| Q |
154 |
gtgcaaattgctctaaaactaaagggtattgaatacacttacattgaagaaaatctaaggaacaaaagtgatcttcttcttaagtat |
240 |
Q |
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| T |
6273486 |
gtgcaaattgctctaaaactaaagggtattgaatacacttacattgaagaaaatttaaggaacaaaagtgatcttcttcttaagtat |
6273572 |
T |
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