View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_high_28 (Length: 252)
Name: NF1377_high_28
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 86 - 252
Target Start/End: Complemental strand, 32892551 - 32892385
Alignment:
| Q |
86 |
atctgaattatccaaatcacactttgtgtttctttctacacactctctcatctatagttttgtgttatcattatcaagtcaaaattaagtgtnnnnnnnn |
185 |
Q |
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| T |
32892551 |
atctgaattatccaaatcacactttgtgtttctttctacacactctctcatctatagttttgtgttatcattatcaagtcaaaattaagtgtgagagaga |
32892452 |
T |
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| Q |
186 |
nnnnnnnnnncatatatttctgtgcacaatttcatggtggatttctgaagcttctaaatttgtctat |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32892451 |
gagaaagagacatatatttctgtgcacaatttcatggtggatttctgaagcttctaaatttgtctat |
32892385 |
T |
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