View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1377_high_30 (Length: 251)

Name: NF1377_high_30
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1377_high_30
NF1377_high_30
[»] chr6 (9 HSPs)
chr6 (1-239)||(1459632-1459870)
chr6 (1-239)||(1471014-1471252)
chr6 (27-172)||(370902-371047)
chr6 (1-227)||(7564842-7565068)
chr6 (45-116)||(1442234-1442305)
chr6 (44-103)||(9819957-9820016)
chr6 (44-103)||(9825637-9825696)
chr6 (178-226)||(176039-176087)
chr6 (139-171)||(9825729-9825761)
[»] chr4 (1 HSPs)
chr4 (32-165)||(55419578-55419711)
[»] chr7 (1 HSPs)
chr7 (60-165)||(3926855-3926960)
[»] scaffold0200 (1 HSPs)
scaffold0200 (46-98)||(903-955)
[»] chr5 (1 HSPs)
chr5 (46-98)||(41973595-41973647)
[»] chr3 (1 HSPs)
chr3 (64-104)||(2631220-2631260)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1459632 - 1459870
Alignment:
Q  1 cctataaacccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1459632 cctataaacccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaaga 1459731  T
Q  101 atgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgagttgag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1459732 atgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgatttgag 1459831  T
Q  201 aagggaagtctggaattgttctccaaaaatcgttaccta 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1459832 aagggaagtctggaattgttctccaaaaatcgttaccta 1459870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1471014 - 1471252
Alignment:
Q  1 cctataaacccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaaga 100  Q
    |||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  1471014 cctagaaacccccaagctaaagttacgcagaggttcatctaaatcataatcaggctgtaaaatctcttgataagactcgtttcctaaattaagagaaaga 1471113  T
Q  101 atgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgagttgag 200  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||||||| |||| |||||||||  |   ||  | |||||||||||||||||| ||||    
T  1471114 atgacccgtgaagagtcattctcttgatctagtacgacccaattaatggtaccacatacaaatttcgccatatacccttcgggttgacccatgagctgag 1471213  T
Q  201 aagggaagtctggaattgttctccaaaaatcgttaccta 239  Q
    ||||||||||| |||| ||||||||||||| ||||||||    
T  1471214 aagggaagtcttgaatcgttctccaaaaattgttaccta 1471252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 370902 - 371047
Alignment:
Q  27 gcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcg 126  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||| |||| ||| |||||||||||||||||||||||| ||||  ||  |||| |      
T  370902 gcagaggttcatctagaccataatcaggctgcgaaatctcttgataatactctttttctaaatcaagagaaagaatgacccatgaattgttgttcttttt 371001  T
Q  127 atccagtatgacccaattaatggtgccacttacaaattttcctgga 172  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||    
T  371002 atctagtatgacccaattaatggttccacttacaaattttcctgga 371047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 7564842 - 7565068
Alignment:
Q  1 cctataaacccccaagctaaagttatgcagaggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaaga 100  Q
    |||| ||||||| |||||||||| | ||||| |||  |  | ||||||||  ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  7564842 cctacaaacccctaagctaaagtaacgcagacgttggtgaacaccataatctggctgcaaaatctcttgataagactcgttacctaaatcaagggaaaga 7564941  T
Q  101 atgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttacaaattttcctggatgtctttcgggttgacccatgagttgag 200  Q
    ||||||| |||||||||||| ||| ||||   ||||||||||| ||||| ||||||||||||||| ||   | ||| ||| |||  |||| ||  || ||    
T  7564942 atgacccatgaagagtcattatcttgatcttttatgacccaatgaatggcgccacttacaaatttcccaacacgtccttcaggtacacccttgttttcag 7565041  T
Q  201 aagggaagtctggaattgttctccaaa 227  Q
    ||||||||||||||||  |||||||||    
T  7565042 aagggaagtctggaatccttctccaaa 7565068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Original strand, 1442234 - 1442305
Alignment:
Q  45 cataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagt 116  Q
    |||||| ||||  ||||||||||||||||||||| ||| ||||||||||||| ||||| | || ||||||||    
T  1442234 cataatcaggcaacaaaatctcttgataagactctttttctaaatcaagagagagaataatccatgaagagt 1442305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 9819957 - 9820016
Alignment:
Q  44 ccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatg 103  Q
    ||||||| ||||||||||||||||||||| |||||  | || ||||||||||||| ||||    
T  9819957 ccataatcaggctgcaaaatctcttgataggactctctccccaaatcaagagaaacaatg 9820016  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 9825637 - 9825696
Alignment:
Q  44 ccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatg 103  Q
    ||||||| ||||||||||||||||||||| |||||  | || ||||||||||||| ||||    
T  9825637 ccataatcaggctgcaaaatctcttgataggactctgtccccaaatcaagagaaacaatg 9825696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 176087 - 176039
Alignment:
Q  178 ttcgggttgacccatgagttgagaagggaagtctggaattgttctccaa 226  Q
    |||||||  |||||||||||| |||||||||||||||||  ||||||||    
T  176087 ttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaa 176039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 9825729 - 9825761
Alignment:
Q  139 ccaattaatggtgccacttacaaattttcctgg 171  Q
    ||||||||| |||||||||||||||||||||||    
T  9825729 ccaattaattgtgccacttacaaattttcctgg 9825761  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 55419711 - 55419578
Alignment:
Q  32 ggttcatctaaaccataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatcca 131  Q
    |||||||||| |||||| |  || |||  |||| ||||||||||||| ||||||||||| |||||||||||||||| |  | |||  |||||| ||||      
T  55419711 ggttcatctagaccatactcgggatgcggaatcacttgataagactcatttcctaaatccagagaaagaatgacccatagatagtatttctcttgatctt 55419612  T
Q  132 gtatgacccaattaatggtgccacttacaaattt 165  Q
     |||| ||||||||||||||||||||||||||||    
T  55419611 ctatggcccaattaatggtgccacttacaaattt 55419578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 165
Target Start/End: Complemental strand, 3926960 - 3926855
Alignment:
Q  60 aaatctcttgataagactcgtttcctaaatcaagagaaagaatgacccgtgaagagtcattctctcgatccagtatgacccaattaatggtgccacttac 159  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||   |  |||| | |||    |||| |||||||||| |||||||||||    
T  3926960 aaatctcttgataggactcgtttcctaaatcaagagaaagaatgacccatgaatcatagttcttttgattttctatggcccaattaattgtgccacttac 3926861  T
Q  160 aaattt 165  Q
    ||||||    
T  3926860 aaattt 3926855  T

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Target: scaffold0200 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 903 - 955
Alignment:
Q  46 ataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaa 98  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||    
T  903 ataattaggctgcaaaacctcttgataagactcattccctaaattaagagaaa 955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 41973595 - 41973647
Alignment:
Q  46 ataattaggctgcaaaatctcttgataagactcgtttcctaaatcaagagaaa 98  Q
    ||||||||||||||||| ||||||||||||||| || ||||||| ||||||||    
T  41973595 ataattaggctgcaaaacctcttgataagactcattccctaaattaagagaaa 41973647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 2631260 - 2631220
Alignment:
Q  64 ctcttgataagactcgtttcctaaatcaagagaaagaatga 104  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  2631260 ctcttgatatgactcattttctaaatcaagagaaagaatga 2631220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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