View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1377_high_33 (Length: 201)
Name: NF1377_high_33
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27888621 - 27888738
Alignment:
| Q |
1 |
tcttctagacaaggattgtttcaaaaggaagaaatctcatcattgccaattctacgcgccaaactttcctcaaaccaaccttctttgctcacatgaacgt |
100 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27888621 |
tcttctgggcaaggattgtttcaaaaggaagaaatttcatcattgccaattctacgcgccaaactttcctcaaaccaacctcctttgctcacatgaacgt |
27888720 |
T |
|
| Q |
101 |
cttttctacccacataat |
118 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
27888721 |
cttttctacccacataat |
27888738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University