View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_1 (Length: 655)
Name: NF1377_low_1
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 100 - 592
Target Start/End: Original strand, 39778641 - 39779134
Alignment:
| Q |
100 |
gctgaagacacggaagcctgtaggtgttgaggcggagaagcaggtttggtcctggttgaaggagagtgtgaggggaagcattgttgttaagggtttggga |
199 |
Q |
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| T |
39778641 |
gctgaagacacggaagcctgtaggtgttgaggcggagaagcaggtttggtcctggttgaaagagagtgtgaggggaagcattgttgttaagggtttggga |
39778740 |
T |
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| Q |
200 |
tcggagagaagtggtttagggttggaatagagttgaattagagtggcgatttcaaattacaaatatagtaagcgattaggttttcagttagaaaagattt |
299 |
Q |
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| T |
39778741 |
tcggagagaagtgttttagggttggaatagagttgaaaaagagtggcgatttcaaattacaaatatagtaagcgattaggttttcagttagaaaagattt |
39778840 |
T |
|
| Q |
300 |
ccggttctagttctattttccagtttcaagtaacttaataaagttactaataaagttgttaaagagtgattaaacatagtggtagattattggttgaaga |
399 |
Q |
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| T |
39778841 |
ccggttctagttctattttccagtttcaagtaacttaataaagttactaataaagttgttaaagagtgattaaacatagtggtagattattggttgaaga |
39778940 |
T |
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| Q |
400 |
cactaccnnnnnnntattattggttgga-gaagatcttatatggactaaagtggagccattgggcatggtttgaaagattcataaaggaatttgtgtgtt |
498 |
Q |
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| T |
39778941 |
cactaccaaaaaaatattattggttgaatgaagatcttatatggactaaagtggagccattgggcatggtttgaaagattcataaaggaatttgtgtgtt |
39779040 |
T |
|
| Q |
499 |
tagaatataagcaaagtcaaggagatcacactttctttttcaaacattcacaaaaaggaaaattgattgtacttcatatttaattgatgatatt |
592 |
Q |
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| T |
39779041 |
tggactataagcaaagtcaaggagatcacactttcttttttaaacattcacaaaaaggaaaattgattgtacttcaaatttaattgatgatatt |
39779134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 569
Target Start/End: Complemental strand, 6382701 - 6382622
Alignment:
| Q |
490 |
ttgtgtgtttagaatataagcaaagtcaaggagatcacactttctttttcaaacattcacaaaaaggaaaattgattgta |
569 |
Q |
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|||||||||||| |||||||||||||||||| |||||| | | || ||||| ||||||||| ||||||| | |||||| |
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| T |
6382701 |
ttgtgtgtttaggctataagcaaagtcaaggaaatcacaatcttttcttcaagcattcacaaggaggaaaactaattgta |
6382622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 592
Target Start/End: Complemental strand, 34416449 - 34416373
Alignment:
| Q |
517 |
aaggagatcacactttctttttcaaacattcacaaaaaggaaaattgattgtacttcatattta-attgatgatatt |
592 |
Q |
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| T |
34416449 |
aaggagatcatactttgttcttcaaacattgacaaggaagaaaattgttagtacttcatatttatgttgatgatatt |
34416373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 43428888 - 43428976
Alignment:
| Q |
7 |
agtgactcactgtaattctgtcaaactgactgtgctaaattttgtagataatccattaaaacatcctgtcctttatgaaatctctgtggtg |
97 |
Q |
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| T |
43428888 |
agtgactcactgtaattctgtcaaactgactg--ctaaattttgtagataatccattaaaacatcctgtcctttatgaaatctctgtggtg |
43428976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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