View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1377_low_11 (Length: 418)

Name: NF1377_low_11
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1377_low_11
NF1377_low_11
[»] chr5 (30 HSPs)
chr5 (97-209)||(15593514-15593620)
chr5 (277-344)||(15593403-15593470)
chr5 (345-406)||(2477636-2477697)
chr5 (345-406)||(11361135-11361196)
chr5 (344-406)||(25398237-25398299)
chr5 (345-406)||(4892202-4892263)
chr5 (345-406)||(33584333-33584394)
chr5 (345-406)||(37321797-37321859)
chr5 (345-406)||(3362778-3362839)
chr5 (345-406)||(6043515-6043576)
chr5 (345-406)||(38899730-38899791)
chr5 (349-406)||(8145379-8145436)
chr5 (345-406)||(12850801-12850862)
chr5 (345-406)||(14138668-14138729)
chr5 (345-406)||(22913058-22913119)
chr5 (345-406)||(3522010-3522071)
chr5 (345-406)||(4434011-4434072)
chr5 (345-406)||(17545689-17545750)
chr5 (344-399)||(12614744-12614799)
chr5 (349-400)||(27481830-27481881)
chr5 (349-402)||(3521806-3521858)
chr5 (349-402)||(6043311-6043363)
chr5 (357-402)||(10458409-10458454)
chr5 (349-399)||(3362996-3363045)
chr5 (349-402)||(4892416-4892468)
chr5 (349-402)||(12614536-12614589)
chr5 (349-402)||(12851016-12851068)
chr5 (345-382)||(13664642-13664679)
chr5 (349-402)||(33584128-33584180)
chr5 (349-402)||(38899524-38899577)
[»] chr8 (39 HSPs)
chr8 (345-406)||(32393858-32393919)
chr8 (344-406)||(34665381-34665443)
chr8 (345-406)||(1645969-1646030)
chr8 (345-406)||(32064745-32064806)
chr8 (345-406)||(35353041-35353102)
chr8 (346-406)||(14128865-14128925)
chr8 (344-406)||(20091805-20091867)
chr8 (344-406)||(24211557-24211619)
chr8 (345-406)||(15187560-15187621)
chr8 (345-406)||(17841854-17841915)
chr8 (349-406)||(37986059-37986116)
chr8 (345-406)||(40780133-40780194)
chr8 (345-406)||(42755046-42755107)
chr8 (344-406)||(38016971-38017032)
chr8 (345-406)||(6108237-6108298)
chr8 (345-406)||(26042120-26042181)
chr8 (345-406)||(37132662-37132723)
chr8 (345-406)||(31347786-31347847)
chr8 (345-406)||(39772805-39772866)
chr8 (345-406)||(41819782-41819843)
chr8 (348-399)||(8453837-8453888)
chr8 (345-406)||(7017869-7017930)
chr8 (346-406)||(27782121-27782181)
chr8 (345-406)||(30835051-30835111)
chr8 (350-402)||(25581247-25581299)
chr8 (355-406)||(7021988-7022039)
chr8 (345-400)||(27835463-27835518)
chr8 (349-406)||(3890413-3890470)
chr8 (349-400)||(42754841-42754891)
chr8 (349-399)||(24844869-24844919)
chr8 (349-399)||(32064963-32065012)
chr8 (349-402)||(1503642-1503694)
chr8 (357-406)||(1886623-1886672)
chr8 (349-402)||(3596840-3596892)
chr8 (349-402)||(17841649-17841701)
chr8 (349-402)||(26041912-26041964)
chr8 (345-386)||(30055543-30055584)
chr8 (357-406)||(30834862-30834911)
chr8 (349-402)||(40779928-40779980)
[»] chr7 (21 HSPs)
chr7 (345-406)||(24394972-24395033)
chr7 (344-406)||(42611810-42611872)
chr7 (345-406)||(3961979-3962040)
chr7 (345-406)||(4974739-4974800)
chr7 (345-406)||(15577854-15577915)
chr7 (345-406)||(34482835-34482896)
chr7 (345-406)||(45637712-45637773)
chr7 (345-406)||(15329273-15329334)
chr7 (345-406)||(25167854-25167915)
chr7 (345-406)||(37477084-37477145)
chr7 (345-406)||(48880931-48880992)
chr7 (348-406)||(36790470-36790528)
chr7 (345-406)||(18036978-18037039)
chr7 (345-406)||(35444558-35444619)
chr7 (345-398)||(20010109-20010162)
chr7 (349-406)||(29737143-29737200)
chr7 (345-406)||(15238382-15238443)
chr7 (345-406)||(42696083-42696144)
chr7 (373-406)||(30848597-30848630)
chr7 (349-402)||(25167655-25167707)
chr7 (349-402)||(48880726-48880778)
[»] chr6 (19 HSPs)
chr6 (345-406)||(6127275-6127336)
chr6 (345-406)||(23291088-23291149)
chr6 (345-406)||(17705469-17705530)
chr6 (345-406)||(33695331-33695392)
chr6 (345-406)||(33696696-33696757)
chr6 (345-406)||(18365577-18365638)
chr6 (345-406)||(18370841-18370902)
chr6 (344-406)||(6031745-6031807)
chr6 (345-399)||(28675148-28675202)
chr6 (345-406)||(17176025-17176086)
chr6 (345-406)||(18889701-18889761)
chr6 (345-402)||(25986930-25986987)
chr6 (348-406)||(8515729-8515787)
chr6 (349-406)||(29693655-29693712)
chr6 (351-406)||(11548592-11548647)
chr6 (345-406)||(2309427-2309488)
chr6 (356-406)||(32702216-32702266)
chr6 (345-406)||(9752249-9752309)
chr6 (349-402)||(33696911-33696963)
[»] chr3 (35 HSPs)
chr3 (345-406)||(2754717-2754778)
chr3 (345-406)||(3574531-3574592)
chr3 (345-406)||(11347268-11347329)
chr3 (345-406)||(37217057-37217118)
chr3 (345-406)||(3456064-3456125)
chr3 (345-406)||(48160905-48160966)
chr3 (345-399)||(42297353-42297407)
chr3 (345-406)||(6041884-6041945)
chr3 (345-406)||(19650904-19650965)
chr3 (345-402)||(3137422-3137479)
chr3 (345-402)||(8320592-8320649)
chr3 (345-406)||(22426348-22426409)
chr3 (345-406)||(30385011-30385072)
chr3 (345-406)||(33113793-33113854)
chr3 (345-406)||(33145713-33145773)
chr3 (345-406)||(37522053-37522114)
chr3 (345-406)||(34482914-34482975)
chr3 (345-406)||(36865031-36865092)
chr3 (346-406)||(9797033-9797093)
chr3 (356-399)||(42921154-42921197)
chr3 (345-410)||(41224233-41224298)
chr3 (345-406)||(33839531-33839592)
chr3 (345-383)||(24343547-24343585)
chr3 (348-382)||(40327878-40327912)
chr3 (345-406)||(8362049-8362110)
chr3 (345-406)||(26612785-26612846)
chr3 (349-402)||(37522267-37522319)
chr3 (349-402)||(42921339-42921392)
chr3 (357-406)||(47738117-47738166)
chr3 (345-376)||(47402630-47402661)
chr3 (349-399)||(40328048-40328098)
chr3 (349-402)||(3137213-3137265)
chr3 (354-399)||(33839752-33839797)
chr3 (349-402)||(34482687-34482739)
chr3 (357-402)||(47738325-47738370)
[»] chr2 (22 HSPs)
chr2 (345-406)||(35160757-35160818)
chr2 (346-406)||(10661888-10661948)
chr2 (345-406)||(9293580-9293641)
chr2 (345-406)||(21936081-21936142)
chr2 (345-406)||(23268066-23268127)
chr2 (345-406)||(33380207-33380268)
chr2 (345-406)||(13354846-13354907)
chr2 (345-399)||(7475519-7475573)
chr2 (348-406)||(31174838-31174896)
chr2 (345-406)||(14941370-14941431)
chr2 (345-406)||(43330912-43330973)
chr2 (347-406)||(21393692-21393751)
chr2 (345-406)||(9723405-9723466)
chr2 (373-406)||(3989104-3989137)
chr2 (349-402)||(23267861-23267913)
chr2 (345-406)||(27847632-27847693)
chr2 (349-399)||(22592929-22592979)
chr2 (348-382)||(40262714-40262748)
chr2 (357-406)||(9723616-9723665)
chr2 (357-406)||(22591494-22591543)
chr2 (349-402)||(33380421-33380473)
chr2 (349-402)||(35160973-35161025)
[»] chr4 (35 HSPs)
chr4 (346-406)||(7745116-7745176)
chr4 (344-406)||(36072946-36073008)
chr4 (345-406)||(10442793-10442854)
chr4 (345-406)||(22199261-22199322)
chr4 (345-406)||(31078823-31078884)
chr4 (345-406)||(49387892-49387953)
chr4 (345-406)||(2624837-2624898)
chr4 (345-406)||(4751446-4751507)
chr4 (345-406)||(21802326-21802387)
chr4 (345-406)||(23964469-23964530)
chr4 (345-406)||(24128239-24128300)
chr4 (345-406)||(33530692-33530753)
chr4 (345-406)||(47290066-47290127)
chr4 (345-406)||(50156582-50156643)
chr4 (345-406)||(24392667-24392728)
chr4 (349-406)||(36073354-36073411)
chr4 (345-406)||(44893426-44893487)
chr4 (345-406)||(53123030-53123092)
chr4 (345-402)||(46441844-46441901)
chr4 (351-406)||(42671675-42671730)
chr4 (345-406)||(37934945-37935006)
chr4 (345-406)||(44893217-44893279)
chr4 (357-406)||(37219841-37219890)
chr4 (349-406)||(25063373-25063430)
chr4 (349-402)||(44893012-44893064)
chr4 (349-402)||(44893640-44893692)
chr4 (349-399)||(17655647-17655697)
chr4 (349-399)||(24128456-24128505)
chr4 (349-402)||(4751661-4751713)
chr4 (373-406)||(9088898-9088931)
chr4 (349-402)||(9089084-9089136)
chr4 (349-402)||(36073563-36073615)
chr4 (358-399)||(36073754-36073795)
chr4 (349-402)||(46442058-46442110)
chr4 (349-402)||(53123245-53123297)
[»] scaffold0204 (2 HSPs)
scaffold0204 (345-406)||(4396-4457)
scaffold0204 (349-402)||(4610-4662)
[»] chr1 (27 HSPs)
chr1 (345-406)||(18404442-18404503)
chr1 (345-406)||(25463676-25463737)
chr1 (345-406)||(40214988-40215049)
chr1 (348-406)||(3559620-3559678)
chr1 (344-406)||(44094697-44094759)
chr1 (345-406)||(9910297-9910358)
chr1 (349-406)||(16045802-16045859)
chr1 (345-406)||(41876446-41876507)
chr1 (345-406)||(19015404-19015465)
chr1 (345-406)||(36966712-36966773)
chr1 (345-406)||(37821838-37821899)
chr1 (345-406)||(6883487-6883548)
chr1 (345-406)||(32000271-32000332)
chr1 (345-406)||(25973414-25973474)
chr1 (345-399)||(40273702-40273756)
chr1 (345-406)||(27523259-27523322)
chr1 (345-382)||(34519758-34519795)
chr1 (345-382)||(51620980-51621017)
chr1 (349-402)||(6883701-6883753)
chr1 (349-402)||(18404662-18404714)
chr1 (349-402)||(19015618-19015670)
chr1 (357-406)||(44690828-44690877)
chr1 (345-406)||(44691033-44691094)
chr1 (349-402)||(51737719-51737771)
chr1 (349-406)||(52064376-52064433)
chr1 (345-382)||(52329319-52329356)
chr1 (343-375)||(28391408-28391440)
[»] scaffold0665 (1 HSPs)
scaffold0665 (346-406)||(3069-3129)
[»] scaffold0085 (1 HSPs)
scaffold0085 (344-406)||(47849-47911)
[»] scaffold0471 (2 HSPs)
scaffold0471 (345-406)||(12842-12903)
scaffold0471 (349-399)||(13059-13108)
[»] scaffold0178 (2 HSPs)
scaffold0178 (345-406)||(11621-11682)
scaffold0178 (357-402)||(11835-11879)
[»] scaffold0096 (1 HSPs)
scaffold0096 (345-406)||(41011-41072)
[»] scaffold0228 (5 HSPs)
scaffold0228 (356-406)||(8413-8463)
scaffold0228 (356-406)||(15995-16045)
scaffold0228 (356-406)||(25947-25997)
scaffold0228 (349-402)||(16198-16250)
scaffold0228 (349-402)||(26150-26202)


Alignment Details
Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 15593620 - 15593514
Alignment:
Q  97 aaaaagacattactaacacggtggctcccaaaaggttaattaactttaacaccgtgcgaaataaccaaaaaacaagcgaaatatgaattattttgtatcc 196  Q
    |||||||||||||||||| |||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15593620 aaaaagacattactaacatggtggctcccaaaaggttaattaac------accgtgcgaaataaccaaaaaacaagcgaaatatgaattattttgtatcc 15593527  T
Q  197 aagaattttgttg 209  Q
    |||||||||||||    
T  15593526 aagaattttgttg 15593514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 15593470 - 15593403
Alignment:
Q  277 catttgagtgctggagatttaatatcttgctcaacaacactcaactttttcatcaagaataaaaactc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15593470 catttgagtgctggagatttaatatcttgctcaacaacactcaactttttcatcaagaataaaaactc 15593403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 2477636 - 2477697
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2477636 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 2477697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 11361196 - 11361135
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 11361135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 25398237 - 25398299
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25398237 cgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaat 25398299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 4892202 - 4892263
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4892202 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaat 4892263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 33584394 - 33584333
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaat 33584333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37321859 - 37321797
Alignment:
Q  345 gagcaatgctatatatc-aagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37321859 gagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgacatggcagaat 37321797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 3362778 - 3362839
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  3362778 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaat 3362839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 6043576 - 6043515
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  6043576 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggaagaat 6043515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 38899791 - 38899730
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  38899791 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaat 38899730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 8145379 - 8145436
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 8145436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 12850801 - 12850862
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  12850801 gagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacatggcagaat 12850862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 14138668 - 14138729
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  14138668 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaattacatggcagaat 14138729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 22913119 - 22913058
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  22913119 gagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgacatggcagaat 22913058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 3522071 - 3522010
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  3522071 gagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacatggcagaat 3522010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 4434072 - 4434011
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||||| ||||||||||    
T  4434072 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgatatggcagaat 4434011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 17545750 - 17545689
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||    
T  17545750 gagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaat 17545689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 12614799 - 12614744
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    |||||||||||||||||||||||| ||||||||||||||  || ||||||||||||    
T  12614799 cgagcaatgctatatatcaagaaatattttatcaagaaagattcaagaatgacatg 12614744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 27481830 - 27481881
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgg 400  Q
    |||||||| ||| |||||||||||||||||||||| || |||||||||||||    
T  27481830 aatgctatgtattaagaaagattttatcaagaaaaattcaagaatgacatgg 27481881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 3521806 - 3521858
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  3521806 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggca 3521858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 6043311 - 6043363
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  6043311 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggca 6043363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 10458409 - 10458454
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||||||| ||||||||||||||| || |||||||||||||||    
T  10458409 atatcaagaaaaattttatcaagaaaaattcaagaatgacatggca 10458454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 3363045 - 3362996
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  3363045 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatg 3362996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 4892468 - 4892416
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  4892468 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 4892416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 12614536 - 12614589
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||| | ||||||||||| |||  ||||||||||||||||||    
T  12614536 aatgctagatatcaagtatgattttatcaaaaaagatttaagaatgacatggca 12614589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 12851068 - 12851016
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  12851068 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 12851016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 13664642 - 13664679
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaa 382  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  13664642 gagcaatgttatatattaagaaagattttatcaagaaa 13664679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 33584128 - 33584180
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  33584128 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 33584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 38899524 - 38899577
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| || |||| || |||||||||||||||    
T  38899524 aatgctagatatcaagaatgattttataaaaaaaaattcaagaatgacatggca 38899577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 32393858 - 32393919
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 32393919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 34665381 - 34665443
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34665381 cgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 34665443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 1646030 - 1645969
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  1646030 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaaagacatggcagaat 1645969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 32064745 - 32064806
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32064745 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 32064806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 35353041 - 35353102
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35353041 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaat 35353102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 14128865 - 14128925
Alignment:
Q  346 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaat 14128925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 20091867 - 20091805
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  20091867 cgagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaat 20091805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 24211619 - 24211557
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  24211619 cgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatggcatggcagaat 24211557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 15187560 - 15187621
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  15187560 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaat 15187621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 17841915 - 17841854
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  17841915 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 17841854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 37986116 - 37986059
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaat 37986059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 40780194 - 40780133
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  40780194 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 40780133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 42755107 - 42755046
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42755107 gagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 42755046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 38016971 - 38017032
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38016971 cgagcaat-ctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 38017032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 6108298 - 6108237
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  6108298 gagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaat 6108237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 26042181 - 26042120
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||    
T  26042181 gagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaat 26042120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37132723 - 37132662
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||    
T  37132723 gagcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgacatggcagaat 37132662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 31347847 - 31347786
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||    
T  31347847 gagcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgacatggcagaat 31347786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 39772866 - 39772805
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  39772866 gagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacatggcagaat 39772805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 41819843 - 41819782
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||    
T  41819843 gagcaatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaat 41819782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 348 - 399
Target Start/End: Original strand, 8453837 - 8453888
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  8453837 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatg 8453888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 7017930 - 7017869
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||| |||||||||| | ||||||| || |||||||||||||||||||    
T  7017930 gagcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgacatggcagaat 7017869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 27782181 - 27782121
Alignment:
Q  346 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||| ||||||||||||||  || || ||||||||||||||||    
T  27782181 agcaatgctatatatcaagaaatattttatcaagaaagattcaataatgacatggcagaat 27782121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 30835111 - 30835051
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||| | |||| || |||||||||||||||||||    
T  30835111 gagcaatgttatatatcaagaaagattttatcga-aaaaattcaagaatgacatggcagaat 30835051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 25581299 - 25581247
Alignment:
Q  350 atgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||||||||||||||| |||||  |||||||||| |||||||||||||||    
T  25581299 atgctatatatcaagaaagtttttacgaagaaaatttcaagaatgacatggca 25581247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 406
Target Start/End: Original strand, 7021988 - 7022039
Alignment:
Q  355 atatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||||||||    
T  7021988 atatatcaagaaagattttctcaagaaaaattcaagaatgatatggcagaat 7022039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 27835518 - 27835463
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgg 400  Q
    ||||||||||||||||||| |||||| |||| ||||||| || |||||||||||||    
T  27835518 gagcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgacatgg 27835463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 3890413 - 3890470
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| |||||||||| |||||||||||||||  || |||||||| ||||||||||    
T  3890413 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgatatggcagaat 3890470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 42754841 - 42754891
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgg 400  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||    
T  42754841 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatgg 42754891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 24844919 - 24844869
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| ||||||||||| ||||||| ||||||| || ||||||||||||    
T  24844919 aatgctacatatcaagaaatattttattaagaaaaattcaagaatgacatg 24844869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 32065012 - 32064963
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  32065012 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatg 32064963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 1503642 - 1503694
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  1503642 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 1503694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 1886672 - 1886623
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||| |||||||||||||||  || ||||||||| |||||||||    
T  1886672 atatcaagaatgattttatcaagaaagattcaagaatgacgtggcagaat 1886623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 3596840 - 3596892
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  3596840 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgatatggca 3596892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 17841649 - 17841701
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  17841649 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 17841701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 26041912 - 26041964
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  26041912 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 26041964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 386
Target Start/End: Original strand, 30055543 - 30055584
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattt 386  Q
    ||||||||||||||| |||| ||||||||||||| |||||||    
T  30055543 gagcaatgctatataccaaggaagattttatcaaaaaaattt 30055584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 30834862 - 30834911
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||| |||||||||||||||  || |||||||||||| ||||||    
T  30834862 atatcaagaatgattttatcaagaaagattaaagaatgacatgacagaat 30834911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 40779928 - 40779980
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  40779928 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 40779980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 24394972 - 24395033
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 24395033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 42611810 - 42611872
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42611810 cgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 42611872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 3961979 - 3962040
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaat 3962040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 4974800 - 4974739
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4974800 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 4974739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 15577915 - 15577854
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15577915 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 15577854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 34482835 - 34482896
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34482835 gagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgacatggcagaat 34482896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 45637712 - 45637773
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45637712 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 45637773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 15329273 - 15329334
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  15329273 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaat 15329334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 25167915 - 25167854
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  25167915 gagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaat 25167854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37477145 - 37477084
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  37477145 gagcaatgctatatatcaagaaagattttctcaagaaaaatttaagaatgacatggcagaat 37477084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 48880992 - 48880931
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  48880992 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaat 48880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 36790528 - 36790470
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36790528 caatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgacatggcagaat 36790470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 18036978 - 18037039
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  18036978 gagcaatgatatatatcaagaaagattttttcaagaaaaatttaagaatgacatggcagaat 18037039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 35444558 - 35444619
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||    
T  35444558 gagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 35444619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 20010162 - 20010109
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacat 398  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  20010162 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacat 20010109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 29737143 - 29737200
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  29737143 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggtagaat 29737200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 15238382 - 15238443
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||    
T  15238382 gagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaat 15238443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 42696083 - 42696144
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||||||||||| || ||  ||||||||||||||| |||||||    
T  42696083 gagcaatgttatatatcaagaaagattttattaaaaattttttaagaatgacatagcagaat 42696144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 30848597 - 30848630
Alignment:
Q  373 tatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||    
T  30848597 tatcaagaaaattttaagaatgacatggcagaat 30848630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 25167655 - 25167707
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  25167655 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 25167707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 48880726 - 48880778
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  48880726 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 48880778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 6127275 - 6127336
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6127275 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 6127336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 23291149 - 23291088
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23291149 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 23291088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 17705530 - 17705469
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaat 17705469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 33695392 - 33695331
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33695392 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 33695331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 33696696 - 33696757
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33696696 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 33696757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 18365638 - 18365577
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  18365638 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaat 18365577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 18370902 - 18370841
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  18370902 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaat 18370841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 344 - 406
Target Start/End: Complemental strand, 6031807 - 6031745
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
T  6031807 cgagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgacatgacagaat 6031745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 28675148 - 28675202
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28675148 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatg 28675202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 17176086 - 17176025
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  17176086 gagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaat 17176025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 18889761 - 18889701
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  18889761 gagcaatgctatatatcaagaaagattt-atcaagaaaatttcaagaatgacatggcagaat 18889701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 25986930 - 25986987
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25986930 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgacatggca 25986987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 8515787 - 8515729
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  8515787 caatgctatatatcaagaaagattttatcaagacagatttaagaatgacatggcagaat 8515729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 29693712 - 29693655
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  29693712 aatgctagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaat 29693655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 11548647 - 11548592
Alignment:
Q  351 tgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||| ||||| ||||||||| || |||||||||||||||||||    
T  11548647 tgctatatatcaagaaaaattttctcaagaaaaattcaagaatgacatggcagaat 11548592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 2309488 - 2309427
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||||| |   ||||||||||| |||||||||||    
T  2309488 gagcaatgttatatatcaagaaagattttatcaaaatttttttaagaatggcatggcagaat 2309427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 32702216 - 32702266
Alignment:
Q  356 tatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||||||||    
T  32702216 tatatcaagaaagattttttcatgaaaatttcaagaatgatatggcagaat 32702266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 9752309 - 9752249
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||| | || |||||||||| || |||||||| ||||||||||    
T  9752309 gagcaatgttatatatcaagaaaaaatt-atcaagaaaaattcaagaatgatatggcagaat 9752249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 33696963 - 33696911
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||  ||||||||||||||||||    
T  33696963 aatgctagatatcaagaatgattttat-aagaaagatttaagaatgacatggca 33696911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 2754717 - 2754778
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2754717 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 2754778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 3574592 - 3574531
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3574592 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 3574531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 11347268 - 11347329
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11347268 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 11347329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37217118 - 37217057
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 37217057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 3456064 - 3456125
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaat 3456125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 48160905 - 48160966
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48160905 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaat 48160966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 42297353 - 42297407
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42297353 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 42297407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 6041884 - 6041945
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  6041884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaat 6041945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 19650965 - 19650904
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19650965 gagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgacatggcagaat 19650904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 3137479 - 3137422
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  3137479 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggca 3137422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 8320649 - 8320592
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatcaagaaaattttaagaatgatatggca 8320592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 22426409 - 22426348
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  22426409 gagcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgacatggcagaat 22426348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 30385011 - 30385072
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||    
T  30385011 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacatggcagaat 30385072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 33113793 - 33113854
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  33113793 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaattacatggcagaat 33113854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 33145713 - 33145773
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  33145713 gagcaatgctatatatcaagaaagattttattaa-aaaattttaagaatgacatggcagaat 33145773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 37522053 - 37522114
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  37522053 gagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaat 37522114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 34482975 - 34482914
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||    
T  34482975 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggtagaat 34482914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 36865092 - 36865031
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||| |||||    
T  36865092 gagcaatgctatatattaaggaagattttattaagaaaattttaagaatgacatggtagaat 36865031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 9797093 - 9797033
Alignment:
Q  346 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaat 9797033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 356 - 399
Target Start/End: Original strand, 42921154 - 42921197
Alignment:
Q  356 tatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  42921154 tatatcaagaaagattttatcaagaaaattttaagaatgacatg 42921197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 41224233 - 41224298
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaattatc 410  Q
    ||||| |||||||||| |||||||||||| ||||||||| || ||||||||||||| |||||||||    
T  41224233 gagcactgctatatattaagaaagattttctcaagaaaaattcaagaatgacatggtagaattatc 41224298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 33839531 - 33839592
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||||| ||||||    
T  33839531 gagcaatgttatatattaagaaagattttatcaaaaaaaatttaagaataacatgacagaat 33839592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 383
Target Start/End: Original strand, 24343547 - 24343585
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaa 383  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  24343547 gagcaatgctatatattaagaaagattttatcaagaaaa 24343585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 382
Target Start/End: Original strand, 40327878 - 40327912
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaa 382  Q
    |||||||||||||||||||||||||||||||||||    
T  40327878 caatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 8362110 - 8362049
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||| |   | ||||||||| || |||||||||||||||||||    
T  8362110 gagcaatgctatatatcaagaaaaaaaatttcaagaaaaattcaagaatgacatggcagaat 8362049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 26612785 - 26612846
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||  |||||||||| ||||||||||| || |||| || |||||||||||||||||||    
T  26612785 gagcaatattatatatcaaaaaagattttataaaaaaaaattcaagaatgacatggcagaat 26612846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 37522319 - 37522267
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  37522319 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggca 37522267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 42921392 - 42921339
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||| ||||| |||||||||||||||  ||||||||||||||||||    
T  42921392 aatgctagatattaagaatgattttatcaagaaatatttaagaatgacatggca 42921339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 47738117 - 47738166
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatgatatggcagaat 47738166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 47402661 - 47402630
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatc 376  Q
    ||||||||||||||||||||||||||||||||    
T  47402661 gagcaatgctatatatcaagaaagattttatc 47402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 40328098 - 40328048
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||||||||| |||||||||||||||  || ||||||||||||    
T  40328098 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatg 40328048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 3137213 - 3137265
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  3137213 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 3137265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 399
Target Start/End: Complemental strand, 33839797 - 33839752
Alignment:
Q  354 tatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||||||||| |||||||||||||||  || ||||||||||||    
T  33839797 tatatatcaagaatgattttatcaagaaagattcaagaatgacatg 33839752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 34482687 - 34482739
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  34482687 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 34482739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 47738370 - 47738325
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    |||||||||| |||||||||||||||  || |||||||||||||||    
T  47738370 atatcaagaatgattttatcaagaaagattcaagaatgacatggca 47738325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 35160757 - 35160818
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35160757 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 35160818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 10661888 - 10661948
Alignment:
Q  346 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 10661948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 9293641 - 9293580
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  9293641 gagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgacatggcagaat 9293580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 21936081 - 21936142
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  21936081 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaat 21936142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 23268127 - 23268066
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  23268127 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 23268066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 33380207 - 33380268
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggctgaat 33380268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 13354846 - 13354907
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  13354846 gagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaat 13354907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 399
Target Start/End: Complemental strand, 7475573 - 7475519
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  7475573 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatg 7475519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 31174896 - 31174838
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  31174896 caatgttatatatcaagaaagattttattaagaaaatttcaagaatgacatggcagaat 31174838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 14941431 - 14941370
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| ||||||  || |||||||||||||||||||    
T  14941431 gagcaatgctatatatcaagaaagattttattaagaaagattcaagaatgacatggcagaat 14941370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 43330912 - 43330973
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||| |||| || |||||||||||||||||||    
T  43330912 gagcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgacatggcagaat 43330973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 21393751 - 21393692
Alignment:
Q  347 gcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||    
T  21393751 gcaatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgacatggtagaat 21393692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 9723405 - 9723466
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| |||||||||||||| ||||||  ||||||||||||||| ||||||    
T  9723405 gagcaatgctatatattaagaaagattttattaagaaagatttaagaatgacatgacagaat 9723466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 3989104 - 3989137
Alignment:
Q  373 tatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||    
T  3989104 tatcaagaaaattttaagaatgacatggcagaat 3989137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 23267861 - 23267913
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  23267861 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggca 23267913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 27847632 - 27847693
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||| ||||| |||||||||||||| ||||||  || |||||||||||| ||||||    
T  27847632 gagcaatgctgtatataaagaaagattttattaagaaagattcaagaatgacatgacagaat 27847693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 22592979 - 22592929
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||||||||| |||||||||||||||  || ||||||||||||    
T  22592979 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatg 22592929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 382
Target Start/End: Complemental strand, 40262748 - 40262714
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaa 382  Q
    ||||| |||||||||||||||||||||||||||||    
T  40262748 caatgttatatatcaagaaagattttatcaagaaa 40262714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 9723665 - 9723616
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||| ||||| |||||||||  ||||||||||||||| ||||||    
T  9723665 atatcaagaatgatttgatcaagaaatatttaagaatgacatgacagaat 9723616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 22591494 - 22591543
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||| || |||| || |||||||| ||||||||||    
T  22591494 atatcaagaaagattttattaaaaaaaattcaagaatgatatggcagaat 22591543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 33380473 - 33380421
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  33380473 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 33380421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 35161025 - 35160973
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  35161025 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 35160973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 346 - 406
Target Start/End: Complemental strand, 7745176 - 7745116
Alignment:
Q  346 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 7745116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 36072946 - 36073008
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36072946 cgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 36073008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 10442854 - 10442793
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10442854 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 10442793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 22199261 - 22199322
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22199261 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 22199322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 31078884 - 31078823
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31078884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 31078823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 49387953 - 49387892
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49387953 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 49387892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 2624837 - 2624898
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  2624837 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaaatggcagaat 2624898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 4751446 - 4751507
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  4751446 gagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaat 4751507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 21802387 - 21802326
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  21802387 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaat 21802326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 23964530 - 23964469
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23964530 gagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaat 23964469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 24128239 - 24128300
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  24128239 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 24128300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 33530753 - 33530692
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  33530753 gagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacatggcagaat 33530692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 47290066 - 47290127
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  47290066 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 47290127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 50156643 - 50156582
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  50156643 gagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgacatggcagaat 50156582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 24392667 - 24392728
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  24392667 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaat 24392728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 36073354 - 36073411
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 36073411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 44893426 - 44893487
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  44893426 gagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacatggcagaat 44893487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 53123030 - 53123092
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatc-aagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||    
T  53123030 gagcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgacatggcagaat 53123092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 402
Target Start/End: Original strand, 46441844 - 46441901
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||    
T  46441844 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgacatggca 46441901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 42671675 - 42671730
Alignment:
Q  351 tgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgacatggcagaat 42671730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37935006 - 37934945
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||| |||||    
T  37935006 gagcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgacatggtagaat 37934945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 44893279 - 44893217
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatc-aagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| |||||||||||| || || ||||||| |||||||||||||||||||    
T  44893279 gagcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgacatggcagaat 44893217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 37219890 - 37219841
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  37219890 atatcaagaatgattttatcaagaaagatttaagaatgacatggcagaat 37219841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 25063373 - 25063430
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| |||||||||| |||||||||||||||  || ||||||||||||| |||||    
T  25063373 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatggtagaat 25063430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 44893012 - 44893064
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  44893012 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggca 44893064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 44893692 - 44893640
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  44893692 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggca 44893640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 17655697 - 17655647
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||| ||||| |||||||||||||||  |||||||||||||||    
T  17655697 aatgctagatattaagaatgattttatcaagaaagatttaagaatgacatg 17655647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 24128505 - 24128456
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  24128505 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatg 24128456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 4751713 - 4751661
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| ||||||||||  ||||||| ||||||| ||||||||||||||||||    
T  4751713 aatgctagatatcaagaataattttat-aagaaaaatttaagaatgacatggca 4751661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 9088898 - 9088931
Alignment:
Q  373 tatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||| |||||||||||||||||||    
T  9088898 tatcaagaaaatttcaagaatgacatggcagaat 9088931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 9089136 - 9089084
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  9089136 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 9089084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 36073615 - 36073563
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  36073615 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 36073563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 399
Target Start/End: Complemental strand, 36073795 - 36073754
Alignment:
Q  358 tatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    |||||||||||||||||| ||||||  |||||||||||||||    
T  36073795 tatcaagaaagattttatgaagaaagatttaagaatgacatg 36073754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 46442110 - 46442058
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  46442110 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 46442058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 53123297 - 53123245
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  53123297 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 53123245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 4396 - 4457
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4396 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaat 4457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 4662 - 4610
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| ||||||||||| ||||||    
T  4662 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgatatggca 4610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 18404442 - 18404503
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18404442 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggtagaat 18404503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 25463676 - 25463737
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25463676 gagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgacatggcagaat 25463737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 40214988 - 40215049
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  40214988 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 40215049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 406
Target Start/End: Original strand, 3559620 - 3559678
Alignment:
Q  348 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3559620 caatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaat 3559678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 44094697 - 44094759
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  44094697 cgagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaat 44094759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 9910358 - 9910297
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  9910358 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 9910297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 16045859 - 16045802
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 16045802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 41876507 - 41876446
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  41876507 gagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacatggcagaat 41876446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 19015404 - 19015465
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  19015404 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaat 19015465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 36966773 - 36966712
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  36966773 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaat 36966712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 37821899 - 37821838
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||    
T  37821899 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaat 37821838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 6883487 - 6883548
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||    
T  6883487 gagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgacatggcagaat 6883548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 32000332 - 32000271
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||||| ||||||    
T  32000332 gagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatgacagaat 32000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 25973414 - 25973474
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  25973414 gagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatgaca-ggcagaat 25973474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 399
Target Start/End: Original strand, 40273702 - 40273756
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||    
T  40273702 gagcaatgctagatatcaagaaagattttttcaagaaaaattcaagaatgacatg 40273756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 27523322 - 27523259
Alignment:
Q  345 gagcaatgctatata--tcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||  |||||||  ||||||||||||||| ||||||||||||||| ||||||    
T  27523322 gagcaatgctatatacatcaagaacaattttatcaagaaaaatttaagaatgacatgacagaat 27523259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 34519758 - 34519795
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaa 382  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  34519758 gagcaatgctatatatcaagaaagattttattaagaaa 34519795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 51620980 - 51621017
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaa 382  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  51620980 gagcaatgctatatatcaagaaagattttattaagaaa 51621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 6883753 - 6883701
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  6883753 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 6883701  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 18404714 - 18404662
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||  ||||||||||||||||||    
T  18404714 aatgctagatatcaagaatgattttat-aagaaagatttaagaatgacatggca 18404662  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 19015670 - 19015618
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  19015670 aatgctacatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 19015618  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 44690828 - 44690877
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| || |||||||||||||||  || |||||||||||||||||||    
T  44690828 atatcaataatgattttatcaagaaagattcaagaatgacatggcagaat 44690877  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 406
Target Start/End: Complemental strand, 44691094 - 44691033
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||| | |||||||||||||||||||| || |||  || |||||| ||||||||||||    
T  44691094 gagcaatgttgtatatcaagaaagattttataaaaaaagattcaagaattacatggcagaat 44691033  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 51737771 - 51737719
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  51737771 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 51737719  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 52064376 - 52064433
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||| ||||||| || |||||||||||||||  || |||||||||||| ||||||    
T  52064376 aatgctagatatcaaaaatgattttatcaagaaagattcaagaatgacatgacagaat 52064433  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 345 - 382
Target Start/End: Original strand, 52329319 - 52329356
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaa 382  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  52329319 gagcaatgttatatatcaagaaagaatttatcaagaaa 52329356  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 375
Target Start/End: Original strand, 28391408 - 28391440
Alignment:
Q  343 tcgagcaatgctatatatcaagaaagattttat 375  Q
    ||||||| |||||||||||||||||||||||||    
T  28391408 tcgagcagtgctatatatcaagaaagattttat 28391440  T

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Target: scaffold0665 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 346 - 406
Target Start/End: Original strand, 3069 - 3129
Alignment:
Q  346 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3069 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaat 3129  T

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Target: scaffold0085 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 47849 - 47911
Alignment:
Q  344 cgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47849 cgagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 47911  T

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Target: scaffold0471 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 12842 - 12903
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  12842 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaat 12903  T

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Target: scaffold0471; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 13108 - 13059
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 399  Q
    ||||||| |||||||||| |||||||| ||||||| |||||||||||||||    
T  13108 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatg 13059  T

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Target: scaffold0178 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 11621 - 11682
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  11621 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaat 11682  T

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Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 11879 - 11835
Alignment:
Q  357 atatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  11879 atatcaagaatgattttat-aagaaaaatttaagaatgacatggca 11835  T

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Target: scaffold0096 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 345 - 406
Target Start/End: Original strand, 41011 - 41072
Alignment:
Q  345 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  41011 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaat 41072  T

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Target: scaffold0228 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 8413 - 8463
Alignment:
Q  356 tatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 8463  T

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Target: scaffold0228; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 15995 - 16045
Alignment:
Q  356 tatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 16045  T

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Target: scaffold0228; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 25947 - 25997
Alignment:
Q  356 tatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaat 406  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaat 25997  T

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Target: scaffold0228; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 16250 - 16198
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  16250 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 16198  T

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Target: scaffold0228; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 402
Target Start/End: Complemental strand, 26202 - 26150
Alignment:
Q  349 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggca 402  Q
    ||||||| |||||||||| |||||||| ||||||| || |||||||||||||||    
T  26202 aatgctagatatcaagaatgattttat-aagaaaaattcaagaatgacatggca 26150  T

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