View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_13 (Length: 392)
Name: NF1377_low_13
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 1349672 - 1349915
Alignment:
| Q |
13 |
aatatctacatgaccaccatcacacatttacacatttcttaggaggagataagatttgtggggcaaaatccacatggcactgtcctattggttgataatg |
112 |
Q |
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| T |
1349672 |
aatatctacatgaccaccatcacacatttacacatttcttaggaggagataagatttgtggggcaaaatccacatggcactgtcctattggtttataatg |
1349771 |
T |
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| Q |
113 |
ataaggctaacacacaaatttccattcttgtgtggttaatataggttcaatgattatcattttcaaaatctaacaagttggtgttaggcaatagccaatt |
212 |
Q |
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| T |
1349772 |
ataaggctaacacacaaatttccattcttgtgtggttaatataggttcaatgattatcattttcaaaatctaacaagttggtattaggcagtagccaatt |
1349871 |
T |
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| Q |
213 |
accacaatattaagaccataatattggaaatagaaaattaaaaa |
256 |
Q |
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| T |
1349872 |
accacaatattaagaccataatattggaaatagaaaaataaaaa |
1349915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 355
Target Start/End: Original strand, 1373164 - 1373302
Alignment:
| Q |
210 |
attaccacaatat-taagaccataatattggaaatagaaaattaaaaatagaatatatataagattgagtacaggttttgcaattaaagcagaagtatat |
308 |
Q |
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| T |
1373164 |
attaccacaatttataagaccataatattggaaatagaaaattaaaaatagtatatatataagtttgagtataggttttgcaattcaagcagaagtat-- |
1373261 |
T |
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| Q |
309 |
cttacaatcttactagtgaactaagggagaaaaacatggcttcctct |
355 |
Q |
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| T |
1373262 |
------atcttactagtgaactaagggagaaaaacatggcttcctct |
1373302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 1383435 - 1383540
Alignment:
| Q |
210 |
attaccacaatat-taagaccataatattggaaatagaaaattaaaaatagaatatata-taagattgagtacaggttttgcaattaaagcagaagtata |
307 |
Q |
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| T |
1383435 |
attaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctttgcaattcaagcagaagtata |
1383534 |
T |
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| Q |
308 |
tcttac |
313 |
Q |
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|||||| |
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| T |
1383535 |
tcttac |
1383540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 1389540 - 1389645
Alignment:
| Q |
210 |
attaccacaatat-taagaccataatattggaaatagaaaattaaaaatagaatatata-taagattgagtacaggttttgcaattaaagcagaagtata |
307 |
Q |
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| T |
1389540 |
attaccacaatttataagaccataatattggaaatagaaaaataaaaacattatataaagcaagtttgagtataggctttgcaattcaagcagaagtata |
1389639 |
T |
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| Q |
308 |
tcttac |
313 |
Q |
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|||||| |
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| T |
1389640 |
tcttac |
1389645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 333
Target Start/End: Original strand, 1357760 - 1357932
Alignment:
| Q |
160 |
caatgattatcattttcaaaatctaacaagttggtgttaggcaatagccaattaccacaatattaaga-ccataatattggaaatagaaaattaaaaata |
258 |
Q |
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||||| |||||||||||| |||| ||||| | || ||| ||| | ||| |||||||||| || ||| ||||||||||||||||| |||| |||| | | |
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| T |
1357760 |
caatgtttatcattttcacaatcaaacaaaattgtattatgcagcaaccagttaccacaatttttagaaccataatattggaaatacaaaaataaagaca |
1357859 |
T |
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| Q |
259 |
gaatatatat-aagattgagtacaggttttgcaattaaagcagaagtatatcttacaatcttactagtgaactaag |
333 |
Q |
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||||||| ||| ||||||| ||| |||| |||| |||||||||||||||||||| |||||||||||||||| |
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| T |
1357860 |
ttatatatagcaagtttgagtataggctttgaaattcaagcagaagtatatcttaca---ttactagtgaactaag |
1357932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1373058 - 1373114
Alignment:
| Q |
98 |
tattggttgataatgataaggctaacacacaaatttccattcttgtgtggttaatat |
154 |
Q |
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||||||| | |||||||||||||| |||| |||||||||||| ||||||||| |||| |
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| T |
1373058 |
tattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
1373114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1383336 - 1383392
Alignment:
| Q |
98 |
tattggttgataatgataaggctaacacacaaatttccattcttgtgtggttaatat |
154 |
Q |
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||||||| | |||||||||||||| |||| |||||||||||| ||||||||| |||| |
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| T |
1383336 |
tattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
1383392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 1389441 - 1389497
Alignment:
| Q |
98 |
tattggttgataatgataaggctaacacacaaatttccattcttgtgtggttaatat |
154 |
Q |
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||||||| | |||||||||||||| |||| |||||||||||| ||||||||| |||| |
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| T |
1389441 |
tattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttgatat |
1389497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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