View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_15 (Length: 365)
Name: NF1377_low_15
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 177 - 341
Target Start/End: Complemental strand, 13203760 - 13203596
Alignment:
| Q |
177 |
tgtacaagctagagcactagtaggttgttcagtttcatgtatcctataaattcaatcttgtttcagaattaacacacaaaatgatacaaaatgaaaacaa |
276 |
Q |
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| T |
13203760 |
tgtacaagctagagcactagtaggttgttcattttcttgtatcctataaattcactcttgtttcagaattcacacacaaaatgatacaaaatgaaaacaa |
13203661 |
T |
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| Q |
277 |
cacaagaaactcaaatttcttgaattattattggaacaacatgttataaataccaacacaaatac |
341 |
Q |
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| T |
13203660 |
cacaacaaactcaaatttcttgaattattattggaacaacatgttataaataccaacacaaatac |
13203596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 13204969 - 13204817
Alignment:
| Q |
23 |
atcatcattagtttgaattgcatacctaaaggcaagccttaataatcatgaaacaaaatgaacttaatgtgttaaatacataaattgggtgaaaggtaac |
122 |
Q |
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| T |
13204969 |
atcatcattagtttgaattgaatacttgaaggcaagccttaataatcatgaaacaaagtgaacttattgtgttaaatacataaaataggtgaaaactaac |
13204870 |
T |
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| Q |
123 |
acacctttttcaaagtagattcctttggagacacaatagcaatatgattaacc |
175 |
Q |
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| T |
13204869 |
acacctttttcaaagtagattcctttgcagacacaatagcaatatgattaacc |
13204817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 13178892 - 13178735
Alignment:
| Q |
23 |
atcatcattagtttgaattgcatacctaaaggcaagccttaataatcatgaaacaaaatgaacttaatgtgttaaatacataaattgggtgaaaggtaac |
122 |
Q |
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| T |
13178892 |
atcatcattagtttgaattgcatacatgaggacaagccttaataatcacgaaacaatttgaacttcttatgttaaatacataaaatgtgtgaaaggtaac |
13178793 |
T |
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| Q |
123 |
acacc-tttttcaaagtagattcctttggagacacaatagcaatatgattaaccttgt |
179 |
Q |
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| T |
13178792 |
ccaccttttttcaaagtagattcctttggagacacaatagcaatatgattaaccttgt |
13178735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 13203913 - 13203829
Alignment:
| Q |
93 |
gttaaatacataaattgggtgaaaggtaacacacctttttcaaagtagattcctttggagacacaatagcaatatgattaacctt |
177 |
Q |
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| T |
13203913 |
gttaaatacatagaatgggtgaaaggtaacacacctttttcaaagtagattcctttggagacacaatagcaatatgattaacctt |
13203829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 13177798 - 13177697
Alignment:
| Q |
192 |
actagtaggttgttcagtttcatgtatcctataaattcaatcttgtttcagaattaacacacaaaatgatacaaaatgaaaacaacacaagaaactcaaa |
291 |
Q |
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| T |
13177798 |
actagtaggttgttcaccttcttgtatc-tataaattcactcttgtttcaaaactaacacacaaaatgatacaaaattaaaacaacac---aaactcaaa |
13177703 |
T |
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| Q |
292 |
tttctt |
297 |
Q |
| |
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|||||| |
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| T |
13177702 |
tttctt |
13177697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 9943907 - 9944001
Alignment:
| Q |
59 |
ccttaataatcatgaaacaaaatgaacttaatgtgttaaatacataaattgggtgaaaggtaacacacctttttcaaagtagattcctttggagaca |
155 |
Q |
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||||||||| ||||||||||| |||||||| | |||||||||||||| |||| |||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
9943907 |
ccttaataagcatgaaacaaagtgaacttattaggttaaatacataaaatgggcgaaaagtaacaca--tttttcaaagtagattcctttgaagaca |
9944001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 13203551 - 13203583
Alignment:
| Q |
290 |
aatttcttgaattattattggaacaacatgtta |
322 |
Q |
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| T |
13203551 |
aatttcttgaattattattggaacaacatgtta |
13203583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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