View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_19 (Length: 341)
Name: NF1377_low_19
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 44840296 - 44840607
Alignment:
| Q |
1 |
cagcaatgcttccacctcgattcttcgatttctttgaataagtcacccataggccatcatcctgtcctgagcctaggttaacatcagcaataccttgaat |
100 |
Q |
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| T |
44840296 |
cagcaatgcttccacctcgattcttcgatttctttgaataagtctcccataggccatcatcctgtcctgagcctaggttaacatcagcaataccttgaat |
44840395 |
T |
|
| Q |
101 |
cagctgctcattattggggtaaaattgagatacacattttccccgaaaatcattattgtggaccacagtaaagggcctcccacttcttctgtaactcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44840396 |
cagctgctcattattggggtaaaattgagatacacattttccccgaaaatcattattgtggaccacagtaaagggcctcccacttcttctgtaactcatt |
44840495 |
T |
|
| Q |
201 |
tttgtgtgccctgttcaggatcattacttttgtcagtcaatcattaacacgaaggttaagtgattaaaacattacaacacagaaggagcctcacaaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44840496 |
tttgtgtgccctgttcaggatcattacttttgtcagtcaatcattaacacgaaggttaagtgattaaaacattacaacacagaaggagcctcacaaaata |
44840595 |
T |
|
| Q |
301 |
ccattcaataag |
312 |
Q |
| |
|
|||||||||||| |
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| T |
44840596 |
ccattcaataag |
44840607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 289
Target Start/End: Original strand, 44852079 - 44852350
Alignment:
| Q |
24 |
ttcgatttctttgaataagtcacccataggccatcatcctgtcctgagcctaggttaacatcagcaataccttgaatcagctgctcattattggggtaaa |
123 |
Q |
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||||||||||||||||||||| ||||| | |||||||||||||| ||||||| |||||||||||||||||||||| |||||||||| | ||||| | || |
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| T |
44852079 |
ttcgatttctttgaataagtctcccatggcccatcatcctgtccagagcctaagttaacatcagcaataccttgagccagctgctcagttttgggatcaa |
44852178 |
T |
|
| Q |
124 |
attgagatacacattttcc------ccgaaaatcattattgtggaccacagtaaagggcctcccacttcttctgtaactcatttttgtgtgccctgttca |
217 |
Q |
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|||||||||||| |||||| | ||||||||| |||| || ||||||||||||| |||| ||||||| |||||||| |||| ||||||||| |
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| T |
44852179 |
attgagatacaccttttcccttggactgaaaatcatcattgccagccgcagtaaagggcctaccacctcttctggaactcattcttgtacaccctgttca |
44852278 |
T |
|
| Q |
218 |
ggatcattacttttgtcagtcaatcattaacacgaaggttaagtgattaaaacattacaacacagaaggagc |
289 |
Q |
| |
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||||| |||||||| ||||||||||||||| || | |||||||| |||||| ||| | || ||||||||||| |
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| T |
44852279 |
ggatcgttacttttatcagtcaatcattaatactagggttaagtaattaaaccatcataatacagaaggagc |
44852350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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