View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_2 (Length: 655)
Name: NF1377_low_2
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 47170177 - 47170470
Alignment:
| Q |
1 |
catgtctggttgggctattgctgttcatggcggcgcaggtgtggatcctaacctgccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgt |
100 |
Q |
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| T |
47170177 |
catgtctggttgggctattgctgttcatggcggtgcaggtgtggatcctaacctcccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgt |
47170276 |
T |
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| Q |
101 |
ctcaatctcggtatctctgctctccgatccaatgcttccgccctcgacgtcgtcgaactcgtcgtatgttttcccattcccatgtctcttccgtaataaa |
200 |
Q |
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| T |
47170277 |
ctcaatctcggtatctctgctctccgatccaatgcttccgccctcgacgtcgtcgaactcgtcgtatgttttcccattcccatgtctcttccgtaataaa |
47170376 |
T |
|
| Q |
201 |
cctaacctaatttatatcatttataatcatgggataatgttacatgcatgcctatgcacataaatgaatcaaatccataatgacaacaatataa |
294 |
Q |
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| T |
47170377 |
cctaacctaatttatatcatttataatcatgggataatgttacatgcatgcctatgcacataaatgaatcaaatccataatgacaataatataa |
47170470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 365 - 627
Target Start/End: Original strand, 47170541 - 47170803
Alignment:
| Q |
365 |
gataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatgga |
464 |
Q |
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| T |
47170541 |
gataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatgga |
47170640 |
T |
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| Q |
465 |
tggtaccaagagaagatgtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctac |
564 |
Q |
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| T |
47170641 |
tggtaccaagagaagatgtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggaaaaatcccctcattcctac |
47170740 |
T |
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| Q |
565 |
ctcgcctacaccggtgcagaagaatttgctagggaacaggttcatatcattacttctcttttt |
627 |
Q |
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| T |
47170741 |
ctcgcctacaccggtgcagaagaatttgctagggaacaggttcatatcattacttctcttttt |
47170803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 397 - 607
Target Start/End: Complemental strand, 42163781 - 42163571
Alignment:
| Q |
397 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagatgtggtgctgtatctg |
496 |
Q |
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| T |
42163781 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctagcataatggatggtacaaagagaagatgtggtgctgtatctg |
42163682 |
T |
|
| Q |
497 |
gtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctacctcgcctacaccggtgcagaagaatttgctag |
596 |
Q |
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| T |
42163681 |
gtgttaccaccgtgaaaaaccctgtctcacttgctcgccttgtcatggaaaagtcccctcattcatacctaggcttctctggggcagaagaatttgcgag |
42163582 |
T |
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| Q |
597 |
ggaacaggttc |
607 |
Q |
| |
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| T |
42163581 |
ggaccaggttc |
42163571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 42165733 - 42165560
Alignment:
| Q |
7 |
tggttgggctattgctgttcatggcggcgcaggtgtggatcctaacctgccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgtctcaat |
106 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||||||||| || |||||||| |||||| ||||||||||||| |||||||| | ||||| ||| |
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| T |
42165733 |
tggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttactcattgtcttaat |
42165634 |
T |
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| Q |
107 |
ctcggtatctctgctctccgatccaatgcttccgccctcgacgtcgtcgaactcgtcgtatgttttcccattcc |
180 |
Q |
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| T |
42165633 |
attggcatatttgctctccgttccaatggttctgctgtcgatgtcgttgaacttgttgtatgttttctcattcc |
42165560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 382 - 607
Target Start/End: Complemental strand, 5480762 - 5480537
Alignment:
| Q |
382 |
gaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagtatcatggatggtaccaagagaagat |
481 |
Q |
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||||| || ||||| |||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||| || |||||||| | || ||| ||| |
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| T |
5480762 |
gaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctagcataatggatggaccaaaaagacgat |
5480663 |
T |
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| Q |
482 |
gtggtgctgtatctggtgtttccaccgtgaaaaatccaatctctcttgctcgtcttgtcatggagaaatcccctcattcctacctcgcctacaccggtgc |
581 |
Q |
| |
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| T |
5480662 |
gcggtgccgtttcaggtttaaccacggtaaaaaatccaatttcactggctcgtttagtcatggataaatctcctcattcctatcttgcttttaacggcgc |
5480563 |
T |
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| Q |
582 |
agaagaatttgctagggaacaggttc |
607 |
Q |
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||||| ||||||||| ||||||||| |
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| T |
5480562 |
tgaagattttgctaggcaacaggttc |
5480537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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