View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1377_low_20 (Length: 331)

Name: NF1377_low_20
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1377_low_20
NF1377_low_20
[»] chr6 (5 HSPs)
chr6 (103-331)||(1459342-1459570)
chr6 (136-254)||(1470754-1470872)
chr6 (158-239)||(1453708-1453789)
chr6 (158-239)||(1465400-1465481)
chr6 (302-330)||(24417486-24417514)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 103 - 331
Target Start/End: Original strand, 1459342 - 1459570
Alignment:
Q  103 gcgtagacattagaagtaaacctagtaaaaccatgaatctcatgaatctttgcaatacgattcttgtaattgtaaacatatatcttattatagaaatcta 202  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1459342 gcgtagacattagaagtaaacctagtaaaaccatgaatctcaggaatctttgaaatacgattcttgtaattgtaaacatatatcttattatagaaatcta 1459441  T
Q  203 ggaccacttggtcatcttcctcagaaatataaagcagtcttgtatagccaagtcttgaatagccataataaccaaggaattcagcaaacgggacaataaa 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1459442 ggaccacttggtcatcttcctcagaaatataaagcagtcttgtatagccaagtcttgaatagccataataatcaaggaattcagcaaacgggacaataaa 1459541  T
Q  303 caatttagtccaagattctttatttccaa 331  Q
    |||||||||||||||||||||||||||||    
T  1459542 caatttagtccaagattctttatttccaa 1459570  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 1470754 - 1470872
Alignment:
Q  136 tgaatctcatgaatctttgcaatacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaa 235  Q
    |||||| || |||||||| || ||| || |||||||||||||||| |||||||||||||||| || |||||||||||||||||||| ||  ||||||| |    
T  1470754 tgaatcccaggaatctttacagtaccatccttgtaattgtaaacacatatcttattatagaattccaggaccacttggtcatcttcttcgaaaatataga 1470853  T
Q  236 gcagtcttgtatagccaag 254  Q
      |||||||||||||||||    
T  1470854 ctagtcttgtatagccaag 1470872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 1453708 - 1453789
Alignment:
Q  158 tacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag 239  Q
    ||||||||||||||||||||||||||| || || ||  || || | || ||||||| |||| ||||| ||||||||||||||    
T  1453708 tacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag 1453789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 1465400 - 1465481
Alignment:
Q  158 tacgattcttgtaattgtaaacatatatcttattatagaaatctaggaccacttggtcatcttcctcagaaatataaagcag 239  Q
    ||||||||||||||||||||||||||| || || ||  || || | || ||||||| |||| ||||| ||||||||||||||    
T  1465400 tacgattcttgtaattgtaaacatatacctcataatttaagtcgaagaacacttggccatcctcctcggaaatataaagcag 1465481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 24417486 - 24417514
Alignment:
Q  302 acaatttagtccaagattctttatttcca 330  Q
    |||||||||||||||||||||||||||||    
T  24417486 acaatttagtccaagattctttatttcca 24417514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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