View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1377_low_22 (Length: 316)

Name: NF1377_low_22
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1377_low_22
NF1377_low_22
[»] chr6 (10 HSPs)
chr6 (139-308)||(9886776-9886945)
chr6 (181-303)||(9866551-9866673)
chr6 (181-308)||(9873752-9873878)
chr6 (49-111)||(9886988-9887050)
chr6 (49-100)||(9887131-9887182)
chr6 (1-51)||(9886988-9887038)
chr6 (181-296)||(9873185-9873299)
chr6 (109-143)||(9887131-9887165)
chr6 (254-302)||(9867136-9867184)
chr6 (1-40)||(9887143-9887182)
[»] chr8 (1 HSPs)
chr8 (181-295)||(40956613-40956727)
[»] chr4 (1 HSPs)
chr4 (49-108)||(50747406-50747465)
[»] chr3 (1 HSPs)
chr3 (49-108)||(4328607-4328666)


Alignment Details
Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 139 - 308
Target Start/End: Complemental strand, 9886945 - 9886776
Alignment:
Q  139 caagtctgcaattgatattcctgatgttaagtctgcaattgatttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaat 238  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  9886945 caagtctgcaattgatattcatgatgttaagtctgcaattgatttccatcgaattgaaaggaatgaaaatgatttattctgttttttcctcttccggaat 9886846  T
Q  239 tcctaaccggttggtcaatgggtttagcatccaccaatggtggctcctcttcttctttctccttcatctc 308  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9886845 ttctaaccggttcgtcaatgggtttagcatccaccaatggtggctcctcttcttctttctccttcttctc 9886776  T

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Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 181 - 303
Target Start/End: Original strand, 9866551 - 9866673
Alignment:
Q  181 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 280  Q
    ||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |    
T  9866551 tttccattgaattcaaaggaatgaaaatgatttattctgttttatcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcg 9866650  T
Q  281 gctcctcttcttctttctccttc 303  Q
    |||||||||||||||||||||||    
T  9866651 gctcctcttcttctttctccttc 9866673  T

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Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 181 - 308
Target Start/End: Complemental strand, 9873878 - 9873752
Alignment:
Q  181 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 280  Q
    ||||||||||||||||| |||||||||||||||  ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||| |    
T  9873878 tttccatcgaattcaaaggaatgaaaatgattttattt-ttttttcctctttcggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcg 9873780  T
Q  281 gctcctcttcttctttctccttcatctc 308  Q
    |||||||||||| |||||||||| ||||    
T  9873779 gctcctcttcttatttctccttcttctc 9873752  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 9887050 - 9886988
Alignment:
Q  49 tgtggaagaatatgaaccttgtgttatacacaagtttctcgagcgatggtatcgctatgttgt 111  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9887050 tgtgaaagaatatgaaccttctgttatacacaagtttctcgagctatggtatcgctatgttgt 9886988  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 9887131 - 9887182
Alignment:
Q  49 tgtggaagaatatgaaccttgtgttatacacaagtttctcgagcgatggtat 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9887131 tgtggaagaatatgaaccttgtgttatacacaagtttctcaagctatggtat 9887182  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 9887038 - 9886988
Alignment:
Q  1 tgaaccttgtgttatacacaagtttctcgagcgatggtatcgctatgttgt 51  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  9887038 tgaaccttctgttatacacaagtttctcgagctatggtatcgctatgttgt 9886988  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 9873185 - 9873299
Alignment:
Q  181 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 280  Q
    |||| |||||||| ||| ||||||||||||||||||||| |||||||| ||||||||  |||||| | || | ||||||||||| ||| |  ||||||      
T  9873185 tttctatcgaatttaaaagaatgaaaatgatttattttg-tttttcctattccggaaaccctaactgtttcgccaatgggtttaacattcttcaatggca 9873283  T
Q  281 gctcctcttcttcttt 296  Q
    ||| ||||||||||||    
T  9873284 gctgctcttcttcttt 9873299  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 9887131 - 9887165
Alignment:
Q  109 tgtggaagaatatgaaccttgtgttatacacaagt 143  Q
    |||||||||||||||||||||||||||||||||||    
T  9887131 tgtggaagaatatgaaccttgtgttatacacaagt 9887165  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 9867184 - 9867136
Alignment:
Q  254 caatgggtttagcatccaccaatggtggctcctcttcttctttctcctt 302  Q
    ||||||||||||||||| ||||||| || | ||||||||||||||||||    
T  9867184 caatgggtttagcatcctccaatggcggatgctcttcttctttctcctt 9867136  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9887143 - 9887182
Alignment:
Q  1 tgaaccttgtgttatacacaagtttctcgagcgatggtat 40  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  9887143 tgaaccttgtgttatacacaagtttctcaagctatggtat 9887182  T

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Target: chr8 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 40956727 - 40956613
Alignment:
Q  181 tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg 280  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||| ||||  |||||| |||| | ||||||||||||||||| |||| || |    
T  40956727 tttccatcaaattcaaaggaatgaaaatgattgattttgttttttcctcttctggaaaccctaactggtttgccaatgggtttagcatcctccaaaggcg 40956628  T
Q  281 gctcctcttcttctt 295  Q
    |||||||||||||||    
T  40956627 gctcctcttcttctt 40956613  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 50747406 - 50747465
Alignment:
Q  49 tgtggaagaatatgaaccttgtgttatacacaagtttctcgagcgatggtatcgctatgt 108  Q
    ||||||||||||||||||| |||||||| ||||||| || |||| |||||||||||||||    
T  50747406 tgtggaagaatatgaacctcgtgttataaacaagttccttgagctatggtatcgctatgt 50747465  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 4328666 - 4328607
Alignment:
Q  49 tgtggaagaatatgaaccttgtgttatacacaagtttctcgagcgatggtatcgctatgt 108  Q
    ||||||||||||||||||| |||||||| ||||||| || |||| |||||||||||||||    
T  4328666 tgtggaagaatatgaacctcgtgttataaacaagttccttgagctatggtatcgctatgt 4328607  T

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