View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_26 (Length: 302)
Name: NF1377_low_26
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 40694467 - 40694732
Alignment:
| Q |
1 |
tcatcaactaaccaccaggcatcacactactttcagcctaagtgattgttttataggtctctcaaattgctcaaccctttaaaataaatcgattaaaagt |
100 |
Q |
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| T |
40694467 |
tcatcaactaaccaccaggcatcacactccttttagcctaagtgattgttttataggtctctcaaattgctcaaccctttaaaataaatcgattaaaagt |
40694566 |
T |
|
| Q |
101 |
tatgtttgttccaaaaacaacaataaaattgtaactcggaaaaattgatgaaattgggagttgtaatccaataaatcagagggggtgtttgagtaatgtg |
200 |
Q |
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| T |
40694567 |
tacgtttgttccaaaaacaacaataaaattgtaactcggaaaaattgatgaaattgggagttgtaatccaataaatcagagggggtgtttgagtaatgtg |
40694666 |
T |
|
| Q |
201 |
aagagttagctagtaacaaactatcaataacatattttcagcacaattaaccttgtgaatcctttt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40694667 |
aagagttagctagtaacaaactatcaataacatattttcagcacaattaaccttgtgaatcctttt |
40694732 |
T |
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