View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_28 (Length: 291)
Name: NF1377_low_28
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 201 - 285
Target Start/End: Complemental strand, 43428970 - 43428888
Alignment:
| Q |
201 |
agagatttcataaaggacaggatgttttaatggattatctacaaaatttagcacagtcagtttgacagaattacagtgagtcact |
285 |
Q |
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| T |
43428970 |
agagatttcataaaggacaggatgttttaatggattatctacaaaatttag--cagtcagtttgacagaattacagtgagtcact |
43428888 |
T |
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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 33974197 - 33974106
Alignment:
| Q |
5 |
gacagaaaagaaaattaatcaatccaattcaaaggaaaatgcttctttaatatcttaaatcagcatttgcagttaatataagatgcctacaa |
96 |
Q |
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| T |
33974197 |
gacagaaaagaaagttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcaacatttgcagaggatagaagatgcctacaa |
33974106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 33991116 - 33991025
Alignment:
| Q |
5 |
gacagaaaagaaaattaatcaatccaattcaaaggaaaatgcttctttaatatcttaaatcagcatttgcagttaatataagatgcctacaa |
96 |
Q |
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| T |
33991116 |
gacagaaaagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcaacatttgcagagaatagaagatgcctacaa |
33991025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 33951596 - 33951525
Alignment:
| Q |
5 |
gacagaaaagaaaattaatcaatccaattcaaaggaaaatgcttctttaatatcttaaatcagcatttgcag |
76 |
Q |
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| T |
33951596 |
gacagaaaagaaggttaattaatctaattcaaagaaaaatgcttctttaatatgttaaatcgtcatttgcag |
33951525 |
T |
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