View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1377_low_31 (Length: 270)
Name: NF1377_low_31
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 51418276 - 51418489
Alignment:
| Q |
50 |
ataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgca |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51418276 |
ataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgca |
51418375 |
T |
|
| Q |
150 |
ggatatgcaagaagtgatgaagagaggaaaaaacatagggaaagcattgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51418376 |
ggatatgcaagaagtgatgaagagaggaaaaaacatagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgat |
51418475 |
T |
|
| Q |
250 |
gctgatatgtattt |
263 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
51418476 |
gctgatatgtattt |
51418489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 51413223 - 51413439
Alignment:
| Q |
50 |
ataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgca |
149 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||||||| | ||||| || || |
|
|
| T |
51413223 |
ataaccaaccaacggtggtgattgagaaattgagcaaaacggtgcgtttactaggtttcatgttacaaaacggtgtctctaagagtaacagagtgataca |
51413322 |
T |
|
| Q |
150 |
ggatatgcaagaagtgatgaagagaggaaaaaacatagggaaagcattgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgat |
249 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51413323 |
agatatgcaagaagtgatgaagagagggaaaaacatagggaaagcattgaacagcgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgat |
51413422 |
T |
|
| Q |
250 |
gctgatatgtatttcat |
266 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
51413423 |
gctgatatgtatttcat |
51413439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 29323690 - 29323740
Alignment:
| Q |
214 |
aagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttc |
264 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
29323690 |
aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttc |
29323740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 29323651 - 29323694
Alignment:
| Q |
152 |
atatgcaagaagtgatgaagagaggaaaaaacatagggaaagca |
195 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
29323651 |
atatgcaagaagtgatgaagagaggtaaaaatatagggaaagca |
29323694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University