View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1377_low_33 (Length: 264)

Name: NF1377_low_33
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1377_low_33
NF1377_low_33
[»] chr2 (5 HSPs)
chr2 (32-150)||(39103604-39103717)
chr2 (107-158)||(39112581-39112633)
chr2 (180-214)||(39103483-39103517)
chr2 (156-185)||(39103525-39103554)
chr2 (29-76)||(39112646-39112694)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 150
Target Start/End: Complemental strand, 39103717 - 39103604
Alignment:
Q  32 aatgtagtaaagtatgaatatagatcaatcatcaccaaatagtgctaatactacaatattaagcttttcgtcttcatatgcatggcatgaaaataaggtt 131  Q
    ||||||||||||| ||||| ||||||||||||||||||| ||||||||| |   ||||||||||||||  | |||||||||||| |||||||||||||||    
T  39103717 aatgtagtaaagtttgaatctagatcaatcatcaccaaacagtgctaatcc---aatattaagctttt--ttttcatatgcatgtcatgaaaataaggtt 39103623  T
Q  132 ggaaatatgaatgataaaa 150  Q
    |||||||||||||||||||    
T  39103622 ggaaatatgaatgataaaa 39103604  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 39112633 - 39112581
Alignment:
Q  107 atatgcatggcatgaaaataaggttgg-aaatatgaatgataaaataaaaata 158  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39112633 atatgcatggcatgaaaataaggttggaaaatatgaatgataaaataaaaata 39112581  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 39103517 - 39103483
Alignment:
Q  180 acacaagaaagaggaagagggggaaataacgttgt 214  Q
    |||||||||||||||||||||||||||||||||||    
T  39103517 acacaagaaagaggaagagggggaaataacgttgt 39103483  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 39103554 - 39103525
Alignment:
Q  156 atagttaccagcgattgaattgaaacacaa 185  Q
    ||||||||||||||||||||||||||||||    
T  39103554 atagttaccagcgattgaattgaaacacaa 39103525  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 39112694 - 39112646
Alignment:
Q  29 agcaatgtagtaaagtatgaata-tagatcaatcatcaccaaatagtgc 76  Q
    |||||||||||||||| |||||  |||||||||||||| ||||||||||    
T  39112694 agcaatgtagtaaagtttgaattctagatcaatcatcatcaaatagtgc 39112646  T

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