View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1377_low_36 (Length: 252)
Name: NF1377_low_36
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 8438454 - 8438211
Alignment:
| Q |
9 |
agcagagacgacgtgttgttatcacaaaagcaacaggcacagcagcttcagatgctaagaagaaaaaagatgcaagagttcaaagagttcacagcataga |
108 |
Q |
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| T |
8438454 |
agcagagacgacgtgttgttatcaccaaagcaacaggcacagcagcttcagatgctaagaagaaaaaagatgcaagagttcaaagagttcatagcataga |
8438355 |
T |
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| Q |
109 |
agagttcgacgaagcacttgaatcagcaaaagacaaactcgttgttgttgagtacgctacaagcgacgactcagaaagcatagagatataccctttcttg |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8438354 |
agagttcgacgaagcacttgaatcagcaaaagataaactcgttgttgttgagtacgctacaagcgacgactcagaaagcatagagatataccctttcttg |
8438255 |
T |
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| Q |
209 |
gttgacctaagccgaacatgtaacgatgttgagtttcttcttgt |
252 |
Q |
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| T |
8438254 |
gttgacctaagccgaacatgtaacgatgttgagtttcttcttgt |
8438211 |
T |
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