View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1377_low_7 (Length: 456)
Name: NF1377_low_7
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 93 - 443
Target Start/End: Complemental strand, 32218356 - 32218013
Alignment:
| Q |
93 |
tggtgctgcaattgattgttgtctttattgatgtggcaacataattgagatagtagaaatttatgaagcctttggattccaatttttgctacgcaagtta |
192 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
32218356 |
tggtgctgcaattgattattgt-tttattgatgtgccaacataattgagatagtagaaatttgtgaagcctctggattccaatttttgctatgcaagtta |
32218258 |
T |
|
| Q |
193 |
gttttgttgagatagtaaaaatattatgaaatcacaatgagtttgacaaaatcacggtaacatcttgattttgttgaaactctaaaatgcaactttaaac |
292 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| | |
|
|
| T |
32218257 |
gttttgttgagatagtagaa--attacaaaatcacaacgagtttgacaaaatcacagtaacactttgattttgttgaaactccaaaatgcaactttaatc |
32218160 |
T |
|
| Q |
293 |
aaaattacagggagtcaccgtgacgctgctaaacacaccatgattccaaatatgcgcacattcttttcaattgtggatactagttagccataattttcca |
392 |
Q |
| |
|
||||||||| | || ||| ||| |||| |||||||||||||||||| | | ||| ||||| ||||| ||||||| || |||||||||| ||||| |
|
|
| T |
32218159 |
aaaattacatgaagacactgtggcgctactaaacacaccatgattcaatacatgtagacattgttttctattgtgggtagtagttagccaaaattt---- |
32218064 |
T |
|
| Q |
393 |
taactacatgttcacatttattcattagtatctatactattttcgctacct |
443 |
Q |
| |
|
||||| ||||||||||||||||||| || ||||||||||||||||| |||| |
|
|
| T |
32218063 |
taactccatgttcacatttattcatcaggatctatactattttcgccacct |
32218013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 93 - 443
Target Start/End: Complemental strand, 7414932 - 7414589
Alignment:
| Q |
93 |
tggtgctgcaattgattgttgtctttattgatgtggcaacataattgagatagtagaaatttatgaagcctttggattccaatttttgctacgcaagtta |
192 |
Q |
| |
|
||||||||| || ||||||||| |||||||||| | ||| |||||||||||||||||||||||| | |||||| |||||||||||||||| |||||||| |
|
|
| T |
7414932 |
tggtgctgctatcgattgttgt-tttattgatgagccaatataattgagatagtagaaatttataatccctttgaattccaatttttgctatgcaagtta |
7414834 |
T |
|
| Q |
193 |
gttttgttgagatagtaaaaatattatgaaatcacaatgagtttgacaaaatcacggtaacatcttgattttgttgaaactctaaaatgcaactttaaac |
292 |
Q |
| |
|
||||||||||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||||| | |
|
|
| T |
7414833 |
gttttgttgagatagtagaaat--tataaaatcacaatgagtttgacaaaatcacagtaacactctgattttgttgaaacttcaaaatgcagctttaatc |
7414736 |
T |
|
| Q |
293 |
aaaattacagggagtcaccgtgacgctgctaaacacaccatgattccaaatatgcgcacattcttttcaattgtggatactagttagccataattttcca |
392 |
Q |
| |
|
|||||||| || |||| | |||| |||||||||||||||||||||||||| ||| |||||| ||||| ||||||| ||||||||||||| |||||| |
|
|
| T |
7414735 |
aaaattacgggaagtctctgtgatgctgctaaacacaccatgattccaaacatgtacacattgttttctattgtgggtactagttagccaaaatttt--- |
7414639 |
T |
|
| Q |
393 |
taactacatgttcacatttattcattagtatctatactattttcgctacct |
443 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7414638 |
-aactcaatattcacatttattcattagtatctatactattttcgccacct |
7414589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 32231615 - 32231459
Alignment:
| Q |
93 |
tggtgctgcaattgattgttgtctttattgatgtggcaacataattgagatagtagaaatttatgaagcctttggattccaatttttgctacgcaagtta |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
32231615 |
tggtgctgcaattgattgttgtctttattgatgtgccaacataattgagatagtagaaatttatgaaccctttggattccaatttttactacgcaagtta |
32231516 |
T |
|
| Q |
193 |
gttttgttgagatagtaaaaatattatgaaatcacaatgagtttgacaaaatcacgg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32231515 |
gttttgttgagatagtaaaaatattatgaaatcacaatgagtttgacaaaatcacgg |
32231459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 43428888 - 43428976
Alignment:
| Q |
7 |
agtgactcactgtaattctgtcaaactgactgtgctaaattttgtagataatccattaaaacatcctgtcctttatgaaatctctgtggtg |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43428888 |
agtgactcactgtaattctgtcaaactgactg--ctaaattttgtagataatccattaaaacatcctgtcctttatgaaatctctgtggtg |
43428976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 254
Target Start/End: Complemental strand, 2373313 - 2373278
Alignment:
| Q |
219 |
tgaaatcacaatgagtttgacaaaatcacggtaaca |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2373313 |
tgaaatcacaatgagtttgataaaatcacggtaaca |
2373278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 28861255 - 28861309
Alignment:
| Q |
224 |
tcacaatgagtttgacaaaatcacggtaacatcttgattttgttgaaactctaaa |
278 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
28861255 |
tcacagtgagtttgatgaaatcacggtgacaccttgagtttgttgaaactctaaa |
28861309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 315
Target Start/End: Original strand, 7873063 - 7873148
Alignment:
| Q |
230 |
tgagtttgacaaaatcacggtaacatcttgattttgttgaaactctaaaatgcaactttaaacaaaattacagggagtcaccgtga |
315 |
Q |
| |
|
||||||||| ||||| ||||| ||| | ||||||||||||| || ||||||| |||||| ||||||||||| | ||||||||| |
|
|
| T |
7873063 |
tgagtttgataaaattacggtgacaccatgattttgttgaagctataaaatgtaacttttgtcaaaattacagtggttcaccgtga |
7873148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 267
Target Start/End: Complemental strand, 24184828 - 24184787
Alignment:
| Q |
226 |
acaatgagtttgacaaaatcacggtaacatcttgattttgtt |
267 |
Q |
| |
|
||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
24184828 |
acaatgagttttacaaaatcacggtaacaacgtgattttgtt |
24184787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 270
Target Start/End: Original strand, 42664648 - 42664689
Alignment:
| Q |
229 |
atgagtttgacaaaatcacggtaacatcttgattttgttgaa |
270 |
Q |
| |
|
||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
42664648 |
atgagtttgacaaaatcacggtagcaccgtgattttgttgaa |
42664689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University