View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1377_low_9 (Length: 432)
Name: NF1377_low_9
Description: NF1377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1377_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 68 - 422
Target Start/End: Original strand, 8437842 - 8438196
Alignment:
| Q |
68 |
caactatcattctcatcaccattcatccttgcaaaaataacagtatcattcatttgtctcgacaacttaatcactgtcggataaaccttaacacatggcc |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8437842 |
caactatcattctcatcaccattcatccttgcaaaaataacagtatcattcatttgtctcgacaacttaatcactgtcggataaaccttaacacatggcc |
8437941 |
T |
|
| Q |
168 |
cacaatgtttaagaccaacatcaagaacaataagcttatgatcaatcttatgatcctcaataagtttctcaacatcttctctgttgtgaagttgcactac |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8437942 |
cacaatgtttaagaccaacatcaagaacaataagcttatgatcaatcttatgatcctcaataagtttctcaacatcttctctgttgtgaagttgcactac |
8438041 |
T |
|
| Q |
268 |
acctgaatggttatcaccgtagtataacacatcaccaacaagcatatctggaccaatagcttcttcttcatgaattttttctttgctcttgtagaaagtg |
367 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8438042 |
acctgaatggttatcaccgtagtataaaacatcaccaacaagcatatctggaccaatagcttcttcttcatgaattttttctttgctcttgtagaaagtg |
8438141 |
T |
|
| Q |
368 |
aagtgtggtactttatcaaccttttctcttttacagagttcttttgttttctctg |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8438142 |
aagtgtggtactttatcaaccttttctcttttacagagttcttttgttttctctg |
8438196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University