View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_high_5 (Length: 375)
Name: NF13780_high_5
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 121 - 365
Target Start/End: Complemental strand, 5376959 - 5376717
Alignment:
| Q |
121 |
acatcataccttcatcgtgaatggccataaaaaacaaaattcaaacacttatct---gctgctcacaccaaagttactaacaaatttatcattacaatca |
217 |
Q |
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| T |
5376959 |
acatcataccttcattgtgaatggtcataaaaaataaaattcaaacactcatcgtccgctgctcacaccaaagttactaacaaatttatcattacaatca |
5376860 |
T |
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| Q |
218 |
acnnnnnnnnnnnnngtaatttagtgaatgaattcttaaatatataaggacaactttcnnnnnnnnnnnnnnnnnngagaaatttgaaaattttgttgca |
317 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
5376859 |
actttttaaatttttgtaatttagtgaatgaattcttaaatatataaggacaacttt-----ttttttttttttttgagaaatttgaaaatttagttgca |
5376765 |
T |
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| Q |
318 |
tgggcgggatcttaataaataagtctagagattgctctgtgctctgtg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5376764 |
tgggcgggatcttaataaataagtctagagattgctctgtgctctgtg |
5376717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 5377126 - 5377025
Alignment:
| Q |
19 |
atacattcatctattccatctgatactttaattctaacttttctaattgttagtttgnnnnnnncattgaaccctgtaaatttagtttaggagaaaaagg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
5377126 |
atacattcatctattccatctgatactttaattctaac-tttctaattattagtttgaaaaaaatattgaaccctgtaaatttagttttggagaaaaagg |
5377028 |
T |
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| Q |
119 |
ata |
121 |
Q |
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||| |
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| T |
5377027 |
ata |
5377025 |
T |
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