View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_high_6 (Length: 363)
Name: NF13780_high_6
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 363
Target Start/End: Complemental strand, 38037416 - 38037072
Alignment:
| Q |
19 |
caaactcccatctcaatcatcaaaaaatattatattatttgagnnnnnnntcgtatcaaacaaatatacgtagatctaactctacaagtaagatcaccta |
118 |
Q |
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| T |
38037416 |
caaactcccatctcaatcatcaaaaaatattatattatttgagaaaaaaatcgtatcaaacaaatatacgtagatctaactctacaagtaagatcaccta |
38037317 |
T |
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| Q |
119 |
aacctttttgagaattctaagtcgaagattgttggnnnnnnnggttaataatcaatgaatgatgaaattggagaaatatggaggaagagttgagattttt |
218 |
Q |
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| T |
38037316 |
aacctttttgagaattctaagtcgaagattgttggaaaaaaaggttaataatcaatgaatgatgaaattggagaaatatggaggaagagctgagattttt |
38037217 |
T |
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| Q |
219 |
atttggtttttgtttagatctatgcttgatagttgaatgtgaaattgtaatgaagatttaggttgttacctttgattgacactacaaggagataaggaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38037216 |
atttggtttttgtttagatctatgcttgatagttgaatgtgaaattgtaatgaagatttaggttgttacctttgatcgacactacaaggagataaggaga |
38037117 |
T |
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| Q |
319 |
ttgtagagaaagggatgacaatgcatgaacttcacctgttctttt |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38037116 |
ttgtagagaaagggatgacaatgcatgaacttcacctgttctttt |
38037072 |
T |
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