View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_low_1 (Length: 606)
Name: NF13780_low_1
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 19 - 598
Target Start/End: Original strand, 49676030 - 49676606
Alignment:
| Q |
19 |
gagtattaacgtacgttcactgtcatcgtcttcacccgatcacgttgagatgaaattgttgaagaataaaaaattaacgcctactcctacgggtgtgaca |
118 |
Q |
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| T |
49676030 |
gagtattaacgtatgttcactgtcatcgtcctcacccgatcacgttgagatgaaattgttgaagaataaaaagttaacgtct---cctacgggtgtgacg |
49676126 |
T |
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| Q |
119 |
gataaatgggatagtgaatcgactacttctaatgtcagcggtcagtcagcaagccgggtttaatataacacttgtagatgaaaagtaatatggtcaatta |
218 |
Q |
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| T |
49676127 |
gataaatgggatagtgaatcgactacttctaatgtcagcggtcagtcagcaagccggatttaatataacacttgtagaggaaatgtaatctggtcaatta |
49676226 |
T |
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| Q |
219 |
gcatatttcctttattgtgttttcttttctccaattgcataatttgaattcgttactatatatatatttagccagagcagaattgcacctatatactaca |
318 |
Q |
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| T |
49676227 |
gcatatttcctttattgtgttttcttttctcccattgcataatttgaattcgttactata-atataattagctagagcagaattgcacctatatactaca |
49676325 |
T |
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| Q |
319 |
ttatttgatacttctctatgttcattctcttgtaagtaattgggttatgatgatttatgnnnnnnnntaagaaaattcagggtaatcatatagtattatt |
418 |
Q |
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| T |
49676326 |
ttatttgatacttctctatgttcattctcttgtaagtaattgggttatgatgatttatgaaaaaaaataagaaaattcagtgtaatcatatagtattatt |
49676425 |
T |
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| Q |
419 |
tatacttt-agagtttatcttattactatagtacataattaagagattttttatcatatcaaaagggaataaaattagcatggtggtccgattgacagag |
517 |
Q |
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| T |
49676426 |
tatactttaagagtttatcttattcctatagtacatacttaagagattttttatcatatcaaaagggaataaaattagcatggtggtccgattgacagag |
49676525 |
T |
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| Q |
518 |
tagcaagaaacaacgagttacctgagcaccgttcaacatttgcgatttgcgaagaaagcaaagtggtggctactgatgatg |
598 |
Q |
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| T |
49676526 |
tagcaagaaacaacgagttacctgagcaccgttcaacatttgcgatttgcgaagaaagcaaagtggcggctactgatgatg |
49676606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 49684063 - 49684201
Alignment:
| Q |
21 |
gtattaacgtacgttcactgtcatcgtcttcacccgatcacgttgagatgaaattgttgaagaataaaaaattaacgcctactcctacgggtgtgacaga |
120 |
Q |
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| T |
49684063 |
gtattaatgtacgttcactgtcactgtcttcactcgaccacgttgagatgaaattgttgaagaataagaagttaacac---ctcctacagctatgacaga |
49684159 |
T |
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| Q |
121 |
taaatgggatagtgaatcgactacttctaatgtcagcggtca |
162 |
Q |
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| T |
49684160 |
taaatcgtatagtgaatcgactgcttctaatgtcagtggtca |
49684201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 359
Target Start/End: Original strand, 49688976 - 49689052
Alignment:
| Q |
282 |
atatttagccagagcagaattgcacctatatactacattatttgatacttctctatgttcattctcttgtaagtaatt |
359 |
Q |
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| T |
49688976 |
atatttaaccacagcagaattgcacctatattctacaata-ttgatacttatctacgttcattctcttataattaatt |
49689052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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