View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_low_18 (Length: 217)
Name: NF13780_low_18
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 18486938 - 18486737
Alignment:
| Q |
1 |
ttccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccatccatctcttgtagctgtatatagaac |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| || |
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| T |
18486938 |
ttccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattcttttaatccaaccatctcttgttgctgtatataaaat |
18486839 |
T |
|
| Q |
101 |
accatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacattctgttatgttatggaaacattaatagacaattaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18486838 |
accatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgttatggaaacattaatagacaattaa |
18486739 |
T |
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| Q |
201 |
at |
202 |
Q |
| |
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|| |
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| T |
18486738 |
at |
18486737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 18513287 - 18513086
Alignment:
| Q |
1 |
ttccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccatccatctcttgtagctgtatatagaac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18513287 |
ttccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctcttgtagctgtatatagaac |
18513188 |
T |
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| Q |
101 |
accatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacattctgttatgttatggaaacattaatagacaattaa |
200 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18513187 |
accatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttatgttatggaaacattaatagataattaa |
18513088 |
T |
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| Q |
201 |
at |
202 |
Q |
| |
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|| |
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| T |
18513087 |
at |
18513086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 18506789 - 18506626
Alignment:
| Q |
1 |
ttccaagcaaagaagaactatctatatgcttccaattctcccaatttccatttctaaccattcttttaatccatccatctcttgtagctgtatatagaac |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18506789 |
ttccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatccaaccatctcttgtagctgtatatagaac |
18506690 |
T |
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| Q |
101 |
accatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18506689 |
accatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcaca |
18506626 |
T |
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