View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_low_2 (Length: 500)
Name: NF13780_low_2
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 3 - 489
Target Start/End: Original strand, 16202870 - 16203356
Alignment:
| Q |
3 |
gctttgattcaatggcgcttcagcagtagttgtctcccctttctctccatatccaagcttcgaagctaccgcatttttagcactggcagctgtgtcggca |
102 |
Q |
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| T |
16202870 |
gctttgattcaatggcgcttcagcagtagttgtctcccctttctctccatatccaagcttcgaagctaccgcatttttagcaccggcagctgtgtcggca |
16202969 |
T |
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| Q |
103 |
attgcagaagttgcagagtagattttgtctgtgtaagtgttgtggccttggtttgatgagttctccattgattcatagtgtagatgaggttgttctccaa |
202 |
Q |
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| T |
16202970 |
attgcagaagttgcagagtagattttgtctgtgtaagtgttgttgccttggtttgatgagttctccattgattcatagtgtagatgcggttgttctccaa |
16203069 |
T |
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| Q |
203 |
gtgttgtgtttttgttgtactgttcatggcttccagctgaagggtattgagttttcattgcactagagtgttgtggttgcatatattgaccatgacttgt |
302 |
Q |
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| T |
16203070 |
gtgttgtgtttttgttgtactgttcatggcttccagctgaagggttttgagttttcattgcactagagtgttgtggttgcatatattgaccatgacttgt |
16203169 |
T |
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| Q |
303 |
agcagaatggtgttcagttggtaaccctgccctaaactgatcatggcttccagaagacgggtacggagtttgcattgcacctgaatgatgtggcaagttt |
402 |
Q |
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| T |
16203170 |
agcagaatggtgttcagttggtaaccctgccctaaactgatcatggcttccagaagatgggtacggagtttgcattgcacctgaatgatgtggcaagttt |
16203269 |
T |
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| Q |
403 |
gtagcagattggtgttgaggattagcctcagttgcactagaatatggtgacaaatattggtcttcactagtgtttaaagggtgatga |
489 |
Q |
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| T |
16203270 |
gtagcagattggtgttgaggattagcctcagtagcactagaatatggtgacaaatattggtcttcactagtgtttaaagggtgatga |
16203356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 16202514 - 16202599
Alignment:
| Q |
52 |
tatccaagcttcgaagctaccgcatttttagcactggcagctgtgtcggcaattgcagaagttgcagagtagattttgtctgtgta |
137 |
Q |
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| T |
16202514 |
tatccaagctttgaagcaacggcatttttagcaccagcagctttgtcggtgactgcagaagctgcattatagattttgtctgtgta |
16202599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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