View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13780_low_4 (Length: 468)
Name: NF13780_low_4
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Complemental strand, 5388558 - 5388133
Alignment:
| Q |
17 |
acattcaacataatacaaatcaaaccaatttattttaacattgattccatatttaaattcacaacaattaatttaatctctaaagtattttttctctcta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5388558 |
acattcaacataatacaaatcaaaccaatttattttaacattgattccatatttaaattcacaataattaatttaatctctaaagtattttttctctcta |
5388459 |
T |
|
| Q |
117 |
attaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcatcactttaatatttgttattaaaatattaggaattaatataata |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
5388458 |
attaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcgtcactttaatctttgttattaaaataataggaattaatataata |
5388359 |
T |
|
| Q |
217 |
aactttcataaactttagagattactgctttaacaataaaattaatgactgatattttagagagtaaattcatattcatagnnnnnnnnnnngagaaaaa |
316 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
5388358 |
aa----------ctttagagattaatgctttaaaaataaaattaatgactgatattttagagagtaaattcatattcatagttattatc----aacaaaa |
5388273 |
T |
|
| Q |
317 |
taagttctatctagagtggtttaggagatacataccttctgcaaaaggggcacatagtcttggatgcatgactcatcacaattttgggaggcatcaccat |
416 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5388272 |
taagttctatgtagagtggtttaggagatacataccttctgcaaaaggggcacatagtcttggatgcatgactcatcacaattttgggaggcatcaccat |
5388173 |
T |
|
| Q |
417 |
ttacattcaaaaccatttcatggtttccattgcttgatga |
456 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5388172 |
ttacattcaaaaccgtttcatggtttccattgcttgatga |
5388133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 84 - 456
Target Start/End: Complemental strand, 5402326 - 5401943
Alignment:
| Q |
84 |
ttaatttaatctctaaagtattttttctctctaattaaatctttaaagcatataaaagtaataaacatttttaaagtatatgaaattcatcactttaata |
183 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5402326 |
ttaatttaatctctaaagtattttt-ctctctaattcaatctctaaagcatataaaagtaataaacatttttaaagtatatgaaattcgtcactttaatc |
5402228 |
T |
|
| Q |
184 |
tttgttattaaaatattaggaattaatataataaactttcataaactttagagattac----------------tgctttaacaataaaattaatgactg |
267 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||| || |||||| || | ||| || ||||||||||| ||| | |
|
|
| T |
5402227 |
tttgttattaaagtattaggaattaatataataa-ctttcatataccatagagactatgacaacgaattttatttacttcaaaaataaaattaaagaccg |
5402129 |
T |
|
| Q |
268 |
atattttagagagtaaattcatattcatagnnnnnnnnnnngagaaaaataagttctatctagagtggtttaggagatacataccttctgcaaaaggggc |
367 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||| ||||| ||| |||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
5402128 |
atattttagagattaaattcatattcatagttattatca---acaaaaaaaagttatatgcagagtggtttaggagatacacaccttctgcaaaagaggc |
5402032 |
T |
|
| Q |
368 |
acatagtcttggatgcatgactcatcacaattttgggaggcatcaccatttacattcaaaaccatttcatggtttccattgcttgatga |
456 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5402031 |
acatagtcttggatgcatgactcatcacacttttgggaaacatcaccatttacattcaaaaccatttcatggtttccattgcttgatga |
5401943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 5414955 - 5414894
Alignment:
| Q |
361 |
aaggggcacatagtcttggatgcatgactcatcacaattttgggaggcatcaccatttacat |
422 |
Q |
| |
|
|||||||||| |||||| ||||| ||| || ||||||||||| ||||||| || |||||||| |
|
|
| T |
5414955 |
aaggggcacagagtctttgatgcctgattcttcacaattttgtgaggcatgactatttacat |
5414894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University