View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_low_7 (Length: 338)
Name: NF13780_low_7
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 337
Target Start/End: Original strand, 43218249 - 43218563
Alignment:
| Q |
30 |
catataaatatttgttaactgtgcatatatgttatgatgtgaaagatcaatttataataaaagaaaattaaaaggctaacttaatataaacatctatttt |
129 |
Q |
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|||||||| |||| ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43218249 |
catataaacattttttaactgtgaatatattttatgatgtaaaagatcaatttataataaaagaaaattaaaaggctaacttaatataaacatctatttt |
43218348 |
T |
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| Q |
130 |
aaatgatcacgaatgat-gttacgnnnnnnnctttaattttagaaaaacacatttaaagcttgtctgaatgacaagtagctcccactcattaagcatgag |
228 |
Q |
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||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43218349 |
aaatgatcacgaatgatagttaagtttttttctttaattttagaaaaacacatttaaagcttgtctgaatgacaagtagctcccactcattaagcatgag |
43218448 |
T |
|
| Q |
229 |
gttacagattaggtgttgtttcatttatttcaacatctttttagtattctttc------atttcaatctcaccatggaagtgttatggtagagtttccac |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43218449 |
gttacagattaggtgttgtttcatttatttcaacatctttttagtattctttcatttcaatttcaatctcaccatggaagtgttatggtagagtttccac |
43218548 |
T |
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| Q |
323 |
gtatatgactctttt |
337 |
Q |
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||||||||||||||| |
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| T |
43218549 |
gtatatgactctttt |
43218563 |
T |
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