View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_low_8 (Length: 334)
Name: NF13780_low_8
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 47332672 - 47332975
Alignment:
| Q |
20 |
ttaggctctaaaatcgtaccaccaatccctcttgatcctgaaacaggtgtctcatcaaaagacataaccatttcacaaaacccattaatctctgcacgta |
119 |
Q |
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| T |
47332672 |
ttaggctctaaaatcgtaccaccaatccctcttgatcctgaaacaggtgtctcatcaaaagacataaccttttcacaaaacccattaatctctgcacgta |
47332771 |
T |
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| Q |
120 |
ttcatcttccaaaactccccaaccaaactcaaaagcttccaatcttagtttactatcatggtggtgctttttgtcttgaatcagctttctcttttcttca |
219 |
Q |
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| T |
47332772 |
ttcatcttccaaaactcaccaaccaaactcaaaagcttccaatcttagtttactatcatggtggtgctttttgtcttgaatcagctttctcttttcttca |
47332871 |
T |
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| Q |
220 |
ccaacgttaccttaacatcattgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgctgcatatgat |
319 |
Q |
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| T |
47332872 |
ccaacgttaccttaacatcattgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgctgcatatgat |
47332971 |
T |
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| Q |
320 |
gatg |
323 |
Q |
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|||| |
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| T |
47332972 |
gatg |
47332975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 47301359 - 47301406
Alignment:
| Q |
263 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
310 |
Q |
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| T |
47301359 |
gttgtttctgttgaatacagacttgctccagaacaccctctacctgct |
47301406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 47304257 - 47304304
Alignment:
| Q |
263 |
gttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
310 |
Q |
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| T |
47304257 |
gttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
47304304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 17841494 - 17841543
Alignment:
| Q |
261 |
ttgttgtttctgttgaatatagacttgcaccagaacaccctcttcctgct |
310 |
Q |
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| T |
17841494 |
ttgttgtttctgttgaatacagactcgctccagaacaccctctacctgct |
17841543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 17473195 - 17473243
Alignment:
| Q |
240 |
ttgcttcacaagcaaatgttcttgttgtttctgttgaatatagacttgc |
288 |
Q |
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| T |
17473195 |
ttgcatcacaagcaaatgtgattgttgtttcaattgaatatagacttgc |
17473243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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