View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13780_low_9 (Length: 315)
Name: NF13780_low_9
Description: NF13780
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13780_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 25492738 - 25493023
Alignment:
| Q |
29 |
tgggaatgctaggcaaccttaataataatgggagctgcacacaaatgacaagtcacccaaagaagtttaaaagagagaactccttaatagaaggcatatg |
128 |
Q |
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| T |
25492738 |
tgggaatactaggaaacctgaataataaagggagctgcacgcaaatgacaagtcaggcaaagaagtttaaaagagaaaactcctcaatagaaggcatatg |
25492837 |
T |
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| Q |
129 |
atcttggagcatgatacttttcaacgatgcttaaacttaagattgctaatgcttgcagtttgagaatcggtaatatgtatatgaatctaatgtaatgaac |
228 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| |
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| T |
25492838 |
atcttggagcatgatacttttcgatgatgcttaaacttaagatttctaatgcttgcagtttgagaatcagtaatatgttaatgaatctagtgtaatgaac |
25492937 |
T |
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| Q |
229 |
atggacttatgtttagaaatgtttggccatcatattataatttcagatctaagaagtttctaaacctagtagaaccctcttatttt |
314 |
Q |
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|||||||| |||||| |||||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
25492938 |
atggacttgcgtttagcaatgtttgtctatcatattataatttcagacctaagaagtttctaaacccagtagaaccctcctatttt |
25493023 |
T |
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