View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13781_high_1 (Length: 612)
Name: NF13781_high_1
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_high_1 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Complemental strand, 41248454 - 41247878
Alignment:
| Q |
18 |
taaaccactctcactgtcatcatggatatgccaatttgacataattgaaggtgcaacaatggccttgctacagagatggacggaacctcaatttgacacc |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41248454 |
taaaccactctcactctcatcatggatatgccaatttgacataattgaaggtgcaacaatggccttgctacagagatggacgtaacctcaatttgacacc |
41248355 |
T |
|
| Q |
118 |
actctccctggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatag |
217 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248354 |
actctccctagtgttctcccacctaatattaattcaaatatgttggtccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatag |
41248255 |
T |
|
| Q |
218 |
ctcttgcaaattttcaatttaaaattgtttcgaaaattttagttgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248254 |
ctcttgcaaattttcaatttaaaattgttacgaaaattttagctgacagactttctattattactatgcgcatcatttctccggagcaacgggggtttat |
41248155 |
T |
|
| Q |
318 |
tcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattgac-aaaggcagtttggtggcaatgtggctttgaaagttgat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41248154 |
tcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaaaggcagtttggtggcaatttggctttgaaagttgat |
41248055 |
T |
|
| Q |
417 |
attaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattt |
516 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41248054 |
attaa----------aacacgttggattggaac-ttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattt |
41247966 |
T |
|
| Q |
517 |
tgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttt |
604 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41247965 |
tgcactcagccaggctttctattttggtgaatggtaagacagtgggttttttctcttgttctcgtggtgtctgacaaggtgacccttt |
41247878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 604
Target Start/End: Original strand, 44377826 - 44377917
Alignment:
| Q |
513 |
attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttt |
604 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| || || |||||||| ||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
44377826 |
attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagacccttt |
44377917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 513 - 604
Target Start/End: Original strand, 44393406 - 44393497
Alignment:
| Q |
513 |
attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttt |
604 |
Q |
| |
|
||||| ||||| || ||||| ||||||||||||||||| || || |||||||| ||||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
44393406 |
attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagacccttt |
44393497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 589
Target Start/End: Original strand, 32299716 - 32299771
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcg |
589 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||| |||| |||||||| ||||| |
|
|
| T |
32299716 |
tctattttggttaatggtaaggcggttggttttttcgcttgctctcgtggggttcg |
32299771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 33236492 - 33236443
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg |
583 |
Q |
| |
|
||||||||||| ||||| |||||||| || |||||||||||||| ||||| |
|
|
| T |
33236492 |
tctattttggttaatggcaaggcagttggctttttctcttgttcccgtgg |
33236443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 44377481 - 44377557
Alignment:
| Q |
169 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgt |
245 |
Q |
| |
|
|||||||| || ||||||| || | ||||||||| ||||| ||||| ||| | || |||||||||||||||||||| |
|
|
| T |
44377481 |
attcctaaaattccaggggcccaagctatgggagatttccgacctattgctttagctaattttcaatttaaaattgt |
44377557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 169 - 245
Target Start/End: Original strand, 44393061 - 44393137
Alignment:
| Q |
169 |
attcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgt |
245 |
Q |
| |
|
|||||||| || ||||||| || | ||||||||| ||||| ||||| ||| | || |||||||||||||||||||| |
|
|
| T |
44393061 |
attcctaaaattccaggggcccaagctatgggagatttccgacctattgctttagctaattttcaatttaaaattgt |
44393137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 127 - 604
Target Start/End: Complemental strand, 10708905 - 10708427
Alignment:
| Q |
127 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10708905 |
ggtgttctcccgcctaatattaattcaaatatgctggtccttattcctaagatcacaggggcgcatgccatgggggacttccgtcctatagctcttgcaa |
10708806 |
T |
|
| Q |
227 |
attttcaatttaaaattgtttcgaaaattttagttgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
10708805 |
attttcaatttaaaattgtttcgaaaattttagttgacaaactttctattatcactatgcgcatcatttcttcggagcaacaggggtttattcaggatag |
10708706 |
T |
|
| Q |
327 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattga-caaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
425 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10708705 |
gaatatttcggtttgtattattattgcatcaaaggcggttagtatgattgataaaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
10708606 |
T |
|
| Q |
426 |
gcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcag |
525 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||| | |||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10708605 |
gccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgtttaccgactggattcttgctattttgcactcag |
10708506 |
T |
|
| Q |
526 |
ccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttt |
604 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
10708505 |
ctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaaggtgacccttt |
10708427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 127 - 604
Target Start/End: Complemental strand, 10922675 - 10922197
Alignment:
| Q |
127 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
226 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
10922675 |
ggtgttctcccgcctaatattaattcaaatatgctggtccttattcctaagatcacaggggcgcatgccatgggggacttccgtcctatagctcttgcaa |
10922576 |
T |
|
| Q |
227 |
attttcaatttaaaattgtttcgaaaattttagttgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
10922575 |
attttcaatttaaaattgtttcgaaaattttagttgacaaactttctattatcactatgcgcatcatttcttcggagcaacaggggtttattcaggatag |
10922476 |
T |
|
| Q |
327 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattga-caaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
425 |
Q |
| |
|
|||||||||| |||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10922475 |
gaatatttcggtttgtattattattgcatcaaaggcggttagtatgattgataaaaggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
10922376 |
T |
|
| Q |
426 |
gcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcag |
525 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||| | |||||| || |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10922375 |
gccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctgtttaccgactggattcttgctattttgcactcag |
10922276 |
T |
|
| Q |
526 |
ccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttt |
604 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
10922275 |
ctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgacaaggtgacccttt |
10922197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 145; Significance: 5e-76; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 196 - 583
Target Start/End: Original strand, 125393 - 125776
Alignment:
| Q |
196 |
atgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgtttcgaaaattttagttgacagactttctattatcactatgcgcatcattt |
295 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||||||||||||| |||| || |||| |||||| || ||||| ||||||||||||||| |
|
|
| T |
125393 |
atgggagactttcgccctattgctcttgcaaattttcaatttaaaattgttacgaagatattagctgacaggctctctat-----ctatgcgcatcattt |
125487 |
T |
|
| Q |
296 |
ctccggagcaacgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaa-ggcagtttggtgg |
394 |
Q |
| |
|
||||||||||||||| ||||||| |||||| ||||| |||| ||||||||| | |||||| ||| ||||||| |||||| ||| ||||||||||||| |
|
|
| T |
125488 |
ctccggagcaacgggcttttattcatgataggaatatatcgggatgtattattcttgcatcaaaggtcgttaataggattgataaaaggcagtttggtgg |
125587 |
T |
|
| Q |
395 |
caatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgttt |
494 |
Q |
| |
|
||||||||||||||| |||||||||||||| | ||| ||||||| |||||||| ||||||| ||| |||| || || |||||||||| ||||| |
|
|
| T |
125588 |
caatgtggctttgaaggttgatattaaaaaggtatttgacacgttagattggaattttttggttgcgatgctaaaaaaattcggtttttctttggtgttt |
125687 |
T |
|
| Q |
495 |
accgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg |
583 |
Q |
| |
|
|| |||| || |||||||||||||||||||| || |||||||||||||||||| ||||||| ||||| ||||| |||||||| |||| |
|
|
| T |
125688 |
acgaactggatccttgctattttgcactcagctaggctttctattttggtgaatcgtaaggcggtgggattttttacttgttcttgtgg |
125776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 172 - 602
Target Start/End: Complemental strand, 44080 - 43649
Alignment:
| Q |
172 |
cctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgtttcgaaaattttagttgacagacttt |
271 |
Q |
| |
|
|||||| ||| ||| ||| |||| ||||| |||||||||||||||||||||||||| || |||||||||||||| | ||||| |||| ||||||||||| |
|
|
| T |
44080 |
cctaaggtcaaaggagcgtaggtcatgggggacttccgtcctatagctcttgcaaacttccaatttaaaattgtcacaaaaatcttagctgacagacttt |
43981 |
T |
|
| Q |
272 |
ctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatagaaatatttcggattgtattattatggcatcagaggcggttaatat |
371 |
Q |
| |
|
||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | |
|
|
| T |
43980 |
ctattattgctatgcgcattatttctccggagcagcgggggtttattcgtgatagaaatatttcggagtgtattattcttgcatcagaggccattaattt |
43881 |
T |
|
| Q |
372 |
gattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcgg |
470 |
Q |
| |
|
|||||| ||| | ||||||| ||||||||||| ||| |||| ||||||||||| || || ||||||||||| || || ||| |||||||| | |
|
|
| T |
43880 |
gattgataaatgacagtttgacggcaatgtggcattgtaagtcgatattaaaaaggcctttgttacgttggattgaaatttcttgatagcggtgctcaga |
43781 |
T |
|
| Q |
471 |
aagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttct |
570 |
Q |
| |
|
|| |||||||| || | ||||||| ||||| ||||||||||| || | ||||| | || ||||| ||||||||||||||||||||||| || ||| |
|
|
| T |
43780 |
aaatttggtttctcacatttgtttactgactggattcttgctatcttatattcagctcggctctctatcttggtgaatggtaaggcagtgggattcttca |
43681 |
T |
|
| Q |
571 |
cttgttctcgtggtgttcgacaaggtgaccct |
602 |
Q |
| |
|
|||||||||||| || ||||| || |||||| |
|
|
| T |
43680 |
attgttctcgtggagtccgacagggggaccct |
43649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 127 - 580
Target Start/End: Complemental strand, 21490691 - 21490237
Alignment:
| Q |
127 |
ggtgttctcccacctaatattaattcaaatatgttgatccttattcctaagatcacaggggcgcaggttatgggagacttccgtcctatagctcttgcaa |
226 |
Q |
| |
|
|||| |||||| ||||||||||| || |||||| | | || | |||||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| | |
|
|
| T |
21490691 |
ggtgctctcccgcctaatattaactctaatatgcttgtttttctccctaaggtcacaggagcgcaggtcatgggggactttcgtcctatagctcttgcta |
21490592 |
T |
|
| Q |
227 |
attttcaatttaaaattgtttcgaaaattttagttgacagactttctattatcactatgcgcatcatttctccggagcaacgggggtttattcgtgatag |
326 |
Q |
| |
|
| || |||||||||||||| | |||||||||| ||||||||| |||||||| ||||||| | ||||||||||||| || |||||||||| |||||| |
|
|
| T |
21490591 |
acttccaatttaaaattgtcacaaaaattttagctgacagactctctattattgctatgcgtgttgtttctccggagcagcgcgggtttattcatgatag |
21490492 |
T |
|
| Q |
327 |
aaatatttcggattgtattattatggcatcagaggcggttaatatgattgacaaa-ggcagtttggtggcaatgtggctttgaaagttgatattaaaaaa |
425 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||| ||||| ||||||| ||| | ||||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
21490491 |
aaatatttcggagtgtattattattgcatcggaggccattaatttgattgataaacgatagtttggcggcaatgtggcattaaaagtcgatattaaaaag |
21490392 |
T |
|
| Q |
426 |
gcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcag |
525 |
Q |
| |
|
|| || | || ||||||||||| || ||| |||||||| | || |||||||| || | ||||||| ||||| || |||||||| || || |||| |
|
|
| T |
21490391 |
gcctttgatacattggattggaatttcttgatagcggtgctcagaaaatttggtttctcacatttgtttactgactggatacttgctatcttacattcag |
21490292 |
T |
|
| Q |
526 |
ccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcg |
580 |
Q |
| |
|
| | || || || ||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
21490291 |
ctcggctctccatcttggtgaatggtaaggcagtgggattcttcaattgttctcg |
21490237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Original strand, 21810796 - 21810845
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg |
583 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||| || ||||| |
|
|
| T |
21810796 |
tctattttggtgaatggaaaggcagttggttttttttcttgctcccgtgg |
21810845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 41346631 - 41346583
Alignment:
| Q |
195 |
tatgggagacttccgtcctatagctcttgcaaattttcaatttaaaatt |
243 |
Q |
| |
|
||||||||||| ||||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
41346631 |
tatgggagactaccgtcctatcgctgctgcaaactttcaatttaaaatt |
41346583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 472 - 604
Target Start/End: Original strand, 12392 - 12524
Alignment:
| Q |
472 |
agtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctc |
571 |
Q |
| |
|
||||||||||||||||| | || || | || ||| | || ||||| ||||| |||||||||||||||||||||||||| ||||| |||| || ||||| |
|
|
| T |
12392 |
agtttggtttttcttctgttttctccaattggattttggcaattttacactcggccagactttctattttggtgaatggcaaggcgctggggttcttctc |
12491 |
T |
|
| Q |
572 |
ttgttctcgtggtgttcgacaaggtgacccttt |
604 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| |
|
|
| T |
12492 |
ttgtgtccgtggtgttcgtcaaggggacccttt |
12524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 12161157 - 12161224
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
601 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
12161157 |
tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc |
12161224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 601
Target Start/End: Original strand, 15157168 - 15157235
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
601 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
15157168 |
tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc |
15157235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 182 - 272
Target Start/End: Complemental strand, 31349273 - 31349183
Alignment:
| Q |
182 |
caggggcgcaggttatgggagacttccgtcctatagctcttgcaaattttcaatttaaaattgtttcgaaaattttagttgacagactttc |
272 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||||||| | |||||||||| ||||||||| | | |||||||||| ||||||| |||| |
|
|
| T |
31349273 |
caggggcgcaggttatgggtgatttccgacctatagctttgacaaattttcagtttaaaattatcacaaaaattttagctgacagattttc |
31349183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 601
Target Start/End: Complemental strand, 15144285 - 15144242
Alignment:
| Q |
558 |
gtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
601 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
15144285 |
gtgggatttttctcttgctctcgtggtgttcgacaaggggaccc |
15144242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 16224540 - 16224589
Alignment:
| Q |
208 |
cgtcctatagctcttgcaaattttcaatttaaaattgtttcgaaaatttt |
257 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
16224540 |
cgtcctatttctctcgcaaattttcaatttaaaattgttgcgaagatttt |
16224589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 534 - 586
Target Start/End: Original strand, 13658 - 13710
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgt |
586 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13658 |
tctattttagtgaatggaaaggcagtgggttttttctcttgctctcgtggtgt |
13710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 513 - 601
Target Start/End: Original strand, 19178093 - 19178181
Alignment:
| Q |
513 |
attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc |
601 |
Q |
| |
|
||||||| |||||| | |||||||||||||||||||||||||| |||||||| || ||||| || || ||||| || ||||| ||||| |
|
|
| T |
19178093 |
attttgctttcagcccgtctttctattttggtgaatggtaaggcggtgggtttcttttcttgctcccgcggtgtccgtcaaggagaccc |
19178181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 534 - 574
Target Start/End: Complemental strand, 22013 - 21973
Alignment:
| Q |
534 |
tctattttggtgaatggtaaggcagtgggttttttctcttg |
574 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||| |
|
|
| T |
22013 |
tctattttggtgaatggaaaggcagttggttttttttcttg |
21973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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