View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13781_high_5 (Length: 378)
Name: NF13781_high_5
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_high_5 |
 | |
|
| [»] scaffold0274 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 17951169 - 17951529
Alignment:
| Q |
1 |
atcctcaaaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17951169 |
atcctaaaaatgcagagaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
17951268 |
T |
|
| Q |
101 |
ttctttgtttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagc |
200 |
Q |
| |
|
|||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17951269 |
ttctttgtttcttattcgaaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagc |
17951368 |
T |
|
| Q |
201 |
tttcgcagaagttgagcttctgctagaaaaggttggtgaacctactttaagttgaattgatcacgatatagagtatttttctttattttgtaattctatg |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17951369 |
ttttgcagaagttgagcttctgctagaaaaggttagtgaacctactttaagttgaattgatcacgatatagagtatttttctttattttataattctatg |
17951468 |
T |
|
| Q |
301 |
cataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatc |
362 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17951469 |
cataacttata-ccaatttgcttgcttgatattttgtcaggtgattatgtatgtggaagatc |
17951529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 18109792 - 18110135
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
18109792 |
gaatgaggatgatgaatctataaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttgttatc |
18109891 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| || ||||||||| |
|
|
| T |
18109892 |
aggaaatggaggcatgcatactttcgttttatatatggagtgggtaacaggctctatgtaacattgatggtaaagttgaatagcttttgctgaagttgag |
18109991 |
T |
|
| Q |
217 |
cttctgctagaaaaggttggtgaacctactttaagttgaattgatcacgatatagagtatttttctttattttgtaattctatgcataacttatacccaa |
316 |
Q |
| |
|
|||||||||| ||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18109992 |
cttctgctagtaaaggttagtgaacctaatttaagttgaattgatcatg--atagagtatttttctttattttgtaattctatgcataacttatatccaa |
18110089 |
T |
|
| Q |
317 |
tttgcttgcttcatattttgtcaggtgattatgtatgtggaagatc |
362 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18110090 |
tttgtttgcttcatattttgtcaagtgattatgtatgtggaagatc |
18110135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 19401072 - 19401343
Alignment:
| Q |
1 |
atcctcaaaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
100 |
Q |
| |
|
||||| ||||||||| |||||| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19401072 |
atcctaaaaatgcagagaatgaagatgacgaatctataaaagaatcgttgtaccttggcatgggagtgggatttgcagtaggtttctgggggatttgtgg |
19401171 |
T |
|
| Q |
101 |
ttctttgtttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagc |
200 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19401172 |
ttctttgtttctcattagaaaatggaggcatgcatattttcggttcatatatggagtgggtaacaggctctatgtaactttgatggtaaagttaaatagc |
19401271 |
T |
|
| Q |
201 |
tttcgcagaagttgagcttctgctagaaaaggttggtgaacctactttaagttgaattgatcacgatataga |
272 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
19401272 |
tttcatagaagttgagcttttgctagtaaaggttagtgaacctaatttaagttgaattgatcatgatataga |
19401343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 18017384 - 18017646
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || || |||||||| || ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18017384 |
gaatgaggatgatgaatctataaaagaatcattgtatctaggcatgggagttggctttgcagcaggtttctgggggatttgtggttctttgtttctcatt |
18017483 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
18017484 |
agaaaatggaggcatgcatattttcggtttatatatggagtgggtaacagactttatgtaactttgatggtaaagttaaatagctttcgtagaagttgag |
18017583 |
T |
|
| Q |
217 |
cttctgctagaaaaggttggtgaacctactttaagttgaattgatcacgatatagagtatttt |
279 |
Q |
| |
|
||||||||| |||| || |||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
18017584 |
cttctgctaataaagattagtgaacgtactttaagttgaattgatcatgatatagagtatttt |
18017646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 19456665 - 19456919
Alignment:
| Q |
24 |
gatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaat |
123 |
Q |
| |
|
|||||||| ||| ||| ||||||| ||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
19456665 |
gatgatgactctataagagaatcaatgtttctcggcttgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaat |
19456764 |
T |
|
| Q |
124 |
ggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgagcttctgc |
223 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| || |||| |
|
|
| T |
19456765 |
ggaggcatgcatacttttgggttatatatggagtgggtaacagggtctatgtaactttgatggtaaagttaaatagctttcgcagaaattgaactcctgc |
19456864 |
T |
|
| Q |
224 |
tagaaaaggttggtgaacctactttaagttgaattgatcacgatatagagtatttt |
279 |
Q |
| |
|
|| ||||||| ||||| || |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
19456865 |
-agtaaaggttagtgaaactgctttcagtttaattgatcaaactatagagtatttt |
19456919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 37 - 231
Target Start/End: Original strand, 19352774 - 19352968
Alignment:
| Q |
37 |
taaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcata |
136 |
Q |
| |
|
|||||||||||||||| || || |||||||| |||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||||||||| |
|
|
| T |
19352774 |
taaaagaatcattgtatctaggcatgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttattagaaaatggaggcatgcata |
19352873 |
T |
|
| Q |
137 |
ctttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgagcttctgctagaaaag |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
19352874 |
ttttcggtttatatatggagtgggtaacaggctttatgtaactttaatggtaaagttaaatagctttcgtagaatatgagcttctgctagtaaag |
19352968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 218
Target Start/End: Original strand, 19465714 - 19465915
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| || | | |||||| |||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
19465714 |
gaatgaggatgatgaatcgataaaagaatcattgtatctaaggacgggagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttatt |
19465813 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19465814 |
aggaaatggaggcatgcatactttcggtttatatatggaataggtgacaagctctatgttactttgacggtaaagttaaatagctttcgcagaaattgag |
19465913 |
T |
|
| Q |
217 |
ct |
218 |
Q |
| |
|
|| |
|
|
| T |
19465914 |
ct |
19465915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 19394511 - 19394710
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| ||||| || ||| |||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19394511 |
gaatgaagatgaagactctataaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttatt |
19394610 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||| ||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19394611 |
aggaaatggaggcatgcatgctttcgggttatatatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgag |
19394710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 41 - 223
Target Start/End: Complemental strand, 18872492 - 18872310
Alignment:
| Q |
41 |
agaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatacttt |
140 |
Q |
| |
|
||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
18872492 |
agaatcaatgtatcttggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttattaggaaatggaggcatgcatacttt |
18872393 |
T |
|
| Q |
141 |
cggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgagcttctgc |
223 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||| ||||||| | ||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
18872392 |
tggtttatatatggagtaggtgacaagctctatgttactttgatgataaagttaaatagctttcgcagatattgagctcctgc |
18872310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 19382255 - 19382492
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||||||| ||| ||| || ||||| || || |||||||| ||||||| ||||||||| |||||||||||||||||||| ||||| || |
|
|
| T |
19382255 |
gaatgaagatgatgaatctataatagagtcgttgtatctaggcatgggagttggatttggagtaggtttttgggggatttgtggttctttatttcttatt |
19382354 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19382355 |
aggaaatggaggcatgcatactttcggtttatctatggagtaggtgacaagctctatgttattttgacggtaaagttaaatagctttcgcagaaattgag |
19382454 |
T |
|
| Q |
217 |
cttctgctagaaaaggttggtg-aacctactttaagtt |
253 |
Q |
| |
|
|| |||| || |||||| ||| ||||||||| ||||| |
|
|
| T |
19382455 |
ctgctgccagttaaggttagtgaaacctacttcaagtt |
19382492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 18166518 - 18166711
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| ||| ||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18166518 |
gaatgaagatgatgactctataagagaatggttgtacctaggcatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttatt |
18166617 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaa |
210 |
Q |
| |
|
|| |||||||| |||||||||||||||||||| || |||| ||| ||| ||||||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
18166618 |
agaaaatggagacatgcatactttcggtttattgatagagttggtgacaagctctatgttactttgaacgtaaagttaaatagctttctcagaa |
18166711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 17726175 - 17725989
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| | |||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
17726175 |
gaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttatt |
17726076 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttt |
203 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
17726075 |
agaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
17725989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 18148171 - 18148389
Alignment:
| Q |
8 |
aaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttg |
107 |
Q |
| |
|
|||||||| |||||| |||||||||||| ||| ||| || ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18148171 |
aaatgcagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctttg |
18148270 |
T |
|
| Q |
108 |
tttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgca |
207 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| | || |||||||| || |||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
18148271 |
tttcttattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactgtgatcgtaaagttaaatagctttcgcc |
18148370 |
T |
|
| Q |
208 |
gaagttgagcttctgctag |
226 |
Q |
| |
|
|||| |||||| ||||||| |
|
|
| T |
18148371 |
gaagctgagctcctgctag |
18148389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 19027404 - 19027218
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| | |||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
19027404 |
gaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgtttcttatt |
19027305 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagcttt |
203 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| ||||||| ||| ||| ||||||||| ||||| | |||||||||||||||||| |
|
|
| T |
19027304 |
agaaaatggaggcatgcatacttttggtttattgatggagtaggtgacaagctctatgttactttaattgtaaagttaaatagcttt |
19027218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 18117309 - 18117507
Alignment:
| Q |
8 |
aaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttg |
107 |
Q |
| |
|
|||| ||| |||||| |||||||||||| ||| ||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18117309 |
aaatacagagaatgaagatgatgaatctataagagagtcattgtatctaggcatgggagtgggatttgcagtaggtttctgggggatttgtggttctatg |
18117408 |
T |
|
| Q |
108 |
tttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgc |
206 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||| | || |||||||| || |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18117409 |
tttcttattaggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgc |
18117507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 17943316 - 17943509
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| ||||||||||| |||||||||| ||||| || |||||||||| |||||| |||||||||||||||||||||||| | || |
|
|
| T |
17943316 |
gaatgaagatgatgactctataaaagaatcactgtaccttggcatgggggttggatttgcagcaggtttttgggggatttgtggttctttgttttttatt |
17943415 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaa |
210 |
Q |
| |
|
|| |||||||||||||||| |||||||||||| || ||||||| ||| |||||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
17943416 |
agaaaatggaggcatgcatgctttcggtttattgatagagtgggcgacaaactctatgttactttgatcgtaaagttaaatagctttcgcagaa |
17943509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 19462533 - 19462751
Alignment:
| Q |
8 |
aaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttg |
107 |
Q |
| |
|
|||| ||| |||||| |||||||||||| ||| ||| || ||||| | || |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19462533 |
aaatacagagaatgaagatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggtttctggggcatttgtggttctttg |
19462632 |
T |
|
| Q |
108 |
tttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgca |
207 |
Q |
| |
|
||||| || |||||||||||||||| ||||||||||| | || |||||||| || |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
19462633 |
tttcttattcggaaatggaggcatgcgtactttcggttagttgatagagtgggtgactttctctatgttactttgaccgtaaagttaaatagctttcgca |
19462732 |
T |
|
| Q |
208 |
gaagttgagcttctgctag |
226 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
19462733 |
gaaactgagctcctgctag |
19462751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 25464425 - 25464608
Alignment:
| Q |
27 |
gatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatgga |
126 |
Q |
| |
|
||||| ||| |||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||||||||||||||||| | || |||||||||| |
|
|
| T |
25464425 |
gatgactctataaaagaatcattgtatctaggcttgggagttggatttgcaataggtttctgggggatttgtggttctttgttttttattaggaaatgga |
25464524 |
T |
|
| Q |
127 |
ggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaa |
210 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||| |||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
25464525 |
ggcatgcatactttcggtttattaatggagtgagtgacaaactctatgttactttgatcgtaaagttaaaccactttcgcagaa |
25464608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 16678586 - 16678805
Alignment:
| Q |
34 |
ctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgc |
133 |
Q |
| |
|
||||||||||||||||||| || || ||||||| || ||||| |||||||||||||| |||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
16678586 |
ctctaaaagaatcattgtatctgggcttgggagttggttttgcggtaggtttctggggtatttgtggttctttgtttcttattaggaaatggaggcacac |
16678685 |
T |
|
| Q |
134 |
atactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgagcttctgctagaaaaggt |
233 |
Q |
| |
|
||||| || ||||| |||||||||| ||| ||| ||||||||||||| |||||||||||||| ||||| ||||||||||| | || ||| ||||| |
|
|
| T |
16678686 |
atactatcaatttattgatggagtgggcgacaagctgtatgtaactttgatggtaaagttaaataactttcacagaagttgagttcctaatagtgaaggt |
16678785 |
T |
|
| Q |
234 |
tggtgaacctactttaagtt |
253 |
Q |
| |
|
| ||| ||||| |||||||| |
|
|
| T |
16678786 |
tagtggacctattttaagtt |
16678805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 19376981 - 19377160
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||||| || || |||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
19376981 |
gaatgaggatagtgaatccataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgcggttctttgtttcttatt |
19377080 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || |||| ||| ||| |||||||| ||||||| ||||||||||| |
|
|
| T |
19377081 |
aggaaatggaggcatgcatactttcagtttattaatagagtaggtgacaaactctatgttactttgatcgtaaagttaaa |
19377160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 18104849 - 18105067
Alignment:
| Q |
8 |
aaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttg |
107 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||| ||| || ||||| | || ||||||||||||||||||||||| |||| |||||||| |||||| || |
|
|
| T |
18104849 |
aaatgcagagaatgaaaatgatgaatctataagagagtcgttgtatttaggcatgggagtgggatttgcagtaggattcttggggattttcggttctatg |
18104948 |
T |
|
| Q |
108 |
tttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgca |
207 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| | || |||||||| || |||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
18104949 |
tttcttattaggaaatggaggcatgcatactttcggttagttaatagagtgggtgactatctctatgttactttgatcgtaaagttaaatagctttcgcc |
18105048 |
T |
|
| Q |
208 |
gaagttgagcttctgctag |
226 |
Q |
| |
|
||| |||||| ||||||| |
|
|
| T |
18105049 |
gaaactgagctcctgctag |
18105067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 19438292 - 19438497
Alignment:
| Q |
1 |
atcctcaaaatgcagcgaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtgg |
100 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||||| ||| ||| || ||||| || || |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
19438292 |
atcctaaaaatgcagagaatgaagatgatgaatctataagagagtcgttgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtgg |
19438391 |
T |
|
| Q |
101 |
ttctttgtttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagc |
200 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||| ||||||||||| | || |||| || || || ||||| ||||||| ||||||||||||||| |
|
|
| T |
19438392 |
ttctatgtttcttattaggaaatggaggcatgcgtactttcggttagttgatacagtgtgtgactatctttatgttactttgatagtaaagttaaatagc |
19438491 |
T |
|
| Q |
201 |
tttcgc |
206 |
Q |
| |
|
|||||| |
|
|
| T |
19438492 |
tttcgc |
19438497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 19335375 - 19335673
Alignment:
| Q |
18 |
aatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatca |
117 |
Q |
| |
|
||||| ||||| || ||| ||| |||||||||||| || || ||| |||| |||||||||| ||||||||||||||||||||||||||||||||| || | |
|
|
| T |
19335375 |
aatgaagatgacgactctttaagagaatcattgtatctagggatgagagttggatttgcagcaggtttctgggggatttgtggttctttgtttcttatta |
19335474 |
T |
|
| Q |
118 |
ggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgagc |
217 |
Q |
| |
|
| |||||||||||||| |||||||||||| | ||| |||||||| ||| | ||||||| ||||||| |||||||| || | ||| |||| |||||| |
|
|
| T |
19335475 |
gaaaatggaggcatgcttactttcggtttgtttatagagtgggtgacaagatctatgttactttgatcgtaaagttgaacatgtttaaaagaaattgagc |
19335574 |
T |
|
| Q |
218 |
ttctgc--tagaaaaggttggt-gaacctacttta-agttgaattgatcacgatatagagtatttttctttattttgtaattctatgcataacttatacc |
313 |
Q |
| |
|
| |||| ||| |||||| || |||||||||| | |||| ||| ||| |||||||||||| | ||||||||||||||||||||| |||||||||| |
|
|
| T |
19335575 |
tcctgctatagttaaggttagtggaacctacttcatagttttattaatctgactatagagtatttgt-tttattttgtaattctatgcaaaacttatacc |
19335673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 19426052 - 19426231
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| | |||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
19426052 |
gaatgaagatgatgactctatcaaagaatcattgtatctagggatgggagttggatttgcagtaggtttctgggggatttgtggttctttgttccttatt |
19426151 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| | || ||||| || | | | ||||||| ||||||| ||||||||||| |
|
|
| T |
19426152 |
agaaaatggaagcatgcatactttcggtttgttgatagagtgcgtgataagatctatgttactttgatcgtaaagttaaa |
19426231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 14895004 - 14894862
Alignment:
| Q |
41 |
agaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatacttt |
140 |
Q |
| |
|
||||||| |||| ||||| |||||| | ||||||||||||||||| |||||||||| ||||||||||||||| || || ||||||||||||||||||||| |
|
|
| T |
14895004 |
agaatcaatgtatcttggcatgggaattggatttgcagtaggtttttgggggatttctggttctttgtttcttattagaaaatggaggcatgcatacttt |
14894905 |
T |
|
| Q |
141 |
cggtttatatatggagtgggtaacaggctctatgtaactttga |
183 |
Q |
| |
|
|||||||| ||||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
14894904 |
cggtttattgatggagtaggtgacaagctctatgttactttga |
14894862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 19355078 - 19355256
Alignment:
| Q |
18 |
aatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatca |
117 |
Q |
| |
|
||||| ||||| || ||| | |||||||||||||| || || |||||||| ||||||||||||||||||||||||||||| ||||||||||||| || | |
|
|
| T |
19355078 |
aatgaagatgacgactctatcaaagaatcattgtatctaggcatgggagttggatttgcagtaggtttctgggggatttgccgttctttgtttctaatta |
19355177 |
T |
|
| Q |
118 |
ggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
| ||||||||||||||||||||||||||| | || ||||| || ||| | ||||||| ||||||| ||||||||||| |
|
|
| T |
19355178 |
gaaaatggaggcatgcatactttcggtttgttgatagagtgcgtgacaagatctatgttactttgatcgtaaagttaaa |
19355256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 19415546 - 19415739
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| ||| |||| ||| | ||||| |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |
|
|
| T |
19415546 |
gaatgaagattatgattctatgaaagattcattgtatctaggaatgggagtgggatttgcagtaggtttctgggggatttgtggttctatttttcttatt |
19415645 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaa |
210 |
Q |
| |
|
|| ||||| |||||||||||||| |||||||| || |||||| || |||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
19415646 |
agaaaatgcaggcatgcatacttccggtttattgatagagtggccggcaatctctatgttactttggtcgtaaagttaaatagctttcgcagaa |
19415739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 18017677 - 18017763
Alignment:
| Q |
276 |
tttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatc |
362 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18017677 |
tttttgtttattttgtaattctatgcataacttatatccattttgtttgcttcatattttatcaggtgattatgtatgtggaagatc |
18017763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 19401377 - 19401469
Alignment:
| Q |
270 |
agagtatttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatc |
362 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| || ||| |||| |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
19401377 |
agagtatttttgtttattttgtaattctatgcataacttttatccattttgtttgcttcatattttatcaggtgattatgcatgtggaagatc |
19401469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 271 - 362
Target Start/End: Original strand, 19353020 - 19353111
Alignment:
| Q |
271 |
gagtatttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatc |
362 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| || |||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19353020 |
gagtattttgcttaattttgtaattctatgcataacttatatacattttgtttgcttcatattttatcaggtgattatgtatgtggaagatc |
19353111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 60 - 210
Target Start/End: Complemental strand, 24493375 - 24493227
Alignment:
| Q |
60 |
atgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatactttcggtttatatatggagtgg |
159 |
Q |
| |
|
|||||||| || |||| ||||||||| ||| ||| |||||| |||| ||||| || |||||||||||||| || |||| |||||||| ||||||||| |
|
|
| T |
24493375 |
atgggagttgggtttggagtaggtttttggttgatgtgtggtcctttatttcttattaggaaatggaggcacgcgtactaccggtttatcgatggagtgg |
24493276 |
T |
|
| Q |
160 |
gtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaa |
210 |
Q |
| |
|
|| ||||| ||||||||||||||| ||| ||||| ||||||||| ||||| |
|
|
| T |
24493275 |
gtgacaggatctatgtaactttgatggtgaagtt--atagctttcacagaa |
24493227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 363
Target Start/End: Original strand, 16679007 - 16679072
Alignment:
| Q |
298 |
atgcataacttatacccaatttgcttgcttcatattttgtcaggtgattatgtatgtggaagatct |
363 |
Q |
| |
|
|||||||||||||| ||| || |||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
16679007 |
atgcataacttatatccatttcatttgcttcatattttctcaggtgattatgcatgtggaagatct |
16679072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 24496815 - 24496728
Alignment:
| Q |
60 |
atgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggcatgcatactttcggtttat |
148 |
Q |
| |
|
|||||||| ||||||| | ||||||||||| ||| |||||| ||||||||| || ||||||||| ||||| |||||| || |||||| |
|
|
| T |
24496815 |
atgggagttggatttggaataggtttctggttgatctgtggtcctttgtttcgtattaggaaatgg-ggcatacatactatcagtttat |
24496728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 8460928 - 8461164
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| ||| |||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
8460928 |
gaatgaagatgatgactctataagagaatcattgtatcttggcatgggagttggatttgcagtgggtttttgggggatttgtggttctttgtttcttatt |
8461027 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||| ||||| ||| |||||||| || ||||| ||||||||||| ||| |||||||||| ||||| |
|
|
| T |
8461028 |
aggaaatggaggcatgcatactatcgatttattgatggaatgggtgacaagctctatggaattttgatggtaaagttaattagatttcgcagaaattgag |
8461127 |
T |
|
| Q |
217 |
cttctgctagaaaaggttggtgaacctactttaagtt |
253 |
Q |
| |
|
|| ||||||| ||||||| |||||||||||||||||| |
|
|
| T |
8461128 |
ctcctgctagcaaaggttagtgaacctactttaagtt |
8461164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 362
Target Start/End: Original strand, 8461232 - 8461325
Alignment:
| Q |
270 |
agagtatttttctttattttgtaattctatgcataacttatacccaatttgcttgcttcatattttgtcaggt-gattatgtatgtggaagatc |
362 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||| | | |||| ||||||| |||||| |||||| ||||||| |||||| ||||| |
|
|
| T |
8461232 |
agagtattttgcttgattttgtaattctatgcataacttatgtctattttgtttgcttcgtattttatcaggtggattatgcatgtggcagatc |
8461325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 13665586 - 13665395
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| ||||| || ||| |||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||| ||||||||||||||||| || |
|
|
| T |
13665586 |
gaatgaagatgacgactctataaaagaatcattgaaccttggcatgggggttggatttgcagcaggtttctgggggatatgtggttctttgtttcttatt |
13665487 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcag |
208 |
Q |
| |
|
|| |||||||||||||||| |||||||||| | || ||||||| ||| |||||| | ||||||| |||||||||||||||||||||||| |
|
|
| T |
13665486 |
agaaaatggaggcatgcatgctttcggttttttgatagagtgggcgacaatctctatattactttgatggtaaagttaaatagctttcgcag |
13665395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 2709198 - 2708981
Alignment:
| Q |
30 |
gaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatcaggaaatggaggc |
129 |
Q |
| |
|
|||||| ||| |||||||||||| || || |||||||| ||||||||||||||||| ||||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
2709198 |
gaatctataagagaatcattgtatctaggcatgggagttggatttgcagtaggtttttgggggatttgtggtcctttgtttcttattaggaaatggagga |
2709099 |
T |
|
| Q |
130 |
atgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgagcttctgctagaaa |
229 |
Q |
| |
|
| |||||| ||||||||| ||||||| ||| ||| ||||||||||||||||| | |||||||||| | ||||| |||| | |||||||| | || | |
|
|
| T |
2709098 |
acacatactatcggtttattgatggagtaggtgacaagctctatgtaactttgatgataaagttaaacaactttcatagaaatcgagcttctacaagtta |
2708999 |
T |
|
| Q |
230 |
aggttggtgaacctactt |
247 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
2708998 |
aggttagtgaacctactt |
2708981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 226
Target Start/End: Original strand, 15536895 - 15537104
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||| || || |||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
15536895 |
gaatgaagatgatgactctaacaaagaatcattgtatctagggatgggagttggatttgcggtaggtttctgggggatttgtggttctttgtttcttatt |
15536994 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaatagctttcgcagaagttgag |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||| || ||| ||| ||| | ||||||| ||||||| ||||||||||| | |||| ||||| ||||| |
|
|
| T |
15536995 |
agaaaatggaggcatgcatactttcggtttactgataaagtaggtgacaagatctatgttactttgatcgtaaagttaaacatgtttcacagaaattgag |
15537094 |
T |
|
| Q |
217 |
cttctgctag |
226 |
Q |
| |
|
|| ||||||| |
|
|
| T |
15537095 |
ctcctgctag |
15537104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 21948 - 22127
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
21948 |
gaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggatttttggttctttgtttctcatt |
22047 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| || |||||||| ||| ||||||||| |||| || ||||||||||| |
|
|
| T |
22048 |
acaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
22127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 2208 - 2029
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
2208 |
gaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcatt |
2109 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| || |||||||| ||| ||||||||| |||| || ||||||||||| |
|
|
| T |
2108 |
acaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 2738 - 2558
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctggggg-atttgtggttctttgtttctcat |
115 |
Q |
| |
|
|||||| |||||||| ||| |||||| |||||||| ||||| ||||| || ||||||||||| |||||||||||| |||| |||||||||||||||||| |
|
|
| T |
2738 |
gaatgaagatgatgactctgcaaaagagtcattgtatcttggcatgggggttggatttgcagttggtttctgggggtatttttggttctttgtttctcat |
2639 |
T |
|
| Q |
116 |
caggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| || |||||||| ||| ||||||||| |||| || ||||||||||| |
|
|
| T |
2638 |
tacaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
2558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 6765 - 6944
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
6765 |
gaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcatt |
6864 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| || |||||||| ||| ||||||||| |||| || ||||||||||| |
|
|
| T |
6865 |
acaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
6944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 196
Target Start/End: Original strand, 11863 - 12042
Alignment:
| Q |
17 |
gaatgaggatgatgaatctctaaaagaatcattgtaccttggtatgggagtgggatttgcagtaggtttctgggggatttgtggttctttgtttctcatc |
116 |
Q |
| |
|
|||||| |||||||| ||| |||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
11863 |
gaatgaagatgatgactctgcaaaagagtcattgtatcttggcatggggattggatttgcagttggtttctgggggattttcggttctttgtttctcatt |
11962 |
T |
|
| Q |
117 |
aggaaatggaggcatgcatactttcggtttatatatggagtgggtaacaggctctatgtaactttgaaggtaaagttaaa |
196 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| || |||||||| ||| ||||||||| |||| || ||||||||||| |
|
|
| T |
11963 |
acaaaatggaggcatgcatactatcggtttattgatagagtgggtgacaagctctatgttacttcgattgtaaagttaaa |
12042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University