View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13781_high_7 (Length: 271)
Name: NF13781_high_7
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 22869175 - 22869426
Alignment:
| Q |
16 |
acaatggtcaaataaatatatgtgcagcagccccctttaacttgggatattttgctaatctttcaagaaacaaagttggtagctgtgttacataggaaag |
115 |
Q |
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| T |
22869175 |
acaatggtcaaataaatatatgtgcagcagccccctttaacttgggatattttgctaatctttcaagaaacaaagttggtagctgtgttacataggaaag |
22869274 |
T |
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| Q |
116 |
tggttgataggggaactattgttgtttctcaaattatgttcaaatggaggaatttgcctcctaagcatgatacttgaatttttgctgctaatattgaccc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22869275 |
tggttgataggggaactattgttgtttctcaaattatgttcaaatggaggaatttgcctcctaagcatgatacttgaatttttgctgctaatattgaccc |
22869374 |
T |
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| Q |
216 |
tgttatggctattcttacatcggaaaatgatcaattggaagtgtctctgctc |
267 |
Q |
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| T |
22869375 |
tgttatggctattcttacatcggaaaatgatcaattggaagtgtctctgctc |
22869426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 267
Target Start/End: Original strand, 22802679 - 22802917
Alignment:
| Q |
29 |
aaatatatgtgcagcagccccctttaactt-gggatattttgctaatctttcaagaaacaaagttggtagctgtgttacataggaaagtggttgataggg |
127 |
Q |
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| T |
22802679 |
aaatatatgtgcagcagccccctttaactgagggatattt-gctaatctttcaagaaacaaagttggtagctgtgttacataggaaaatggttgataggg |
22802777 |
T |
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| Q |
128 |
gaactattgttgtttctcaaattatgttcaaatggaggaatttgcctcctaagcatgatacttgaatttttgctgctaatattgaccctgttatggctat |
227 |
Q |
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| T |
22802778 |
gaactattgttgtttctcaaattatgttcaaatggaggaatttgcctcctaaacatggtacttgaa-gtttgctgctaatattgaccctgttatggctat |
22802876 |
T |
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| Q |
228 |
tcttacatcggaaaatgatcaatt--ggaagtgtctctgctc |
267 |
Q |
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| T |
22802877 |
tc-tacatcggaaaatgatcaattggggaagtgtctctgctc |
22802917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 11234046 - 11233933
Alignment:
| Q |
137 |
ttgtttctcaaattatgttcaaatggaggaatttgcctcctaagcatgatacttgaatttttgctgctaatattgaccctgttatggctattcttacatc |
236 |
Q |
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| T |
11234046 |
ttgttactcaaattattctcaaatggaggaattttcctcctaagcatggtacttgaaagtttgctgctaatattgatcctgttatggctattc-tacat- |
11233949 |
T |
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| Q |
237 |
ggaaaatgatcaattg |
252 |
Q |
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| T |
11233948 |
agaaaatgatcaattg |
11233933 |
T |
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