View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13781_low_11 (Length: 250)
Name: NF13781_low_11
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_low_11 |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 30513777 - 30514017
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaactattcattgtaattgcttaaaattaccacaacaaaccatttttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30513777 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttggcattaactcttcattgtaattgcttgaaattaccacaacaaaccatttttgttc |
30513876 |
T |
|
| Q |
106 |
taatgaaatcaacaataacattcctttactagaacaagtaattatggcaagatgagatgagacaaaccttggttggttaccattccaacaacttaatgag |
205 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
30513877 |
taatggaatcaacaataacattcctttactagaacaagtaattatggcaagatgagatgagacaaagcttggctggttaccattccaacaacttaatgag |
30513976 |
T |
|
| Q |
206 |
acaaatcttcacaaac-gctctaaatatgtttcttctctct |
245 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
30513977 |
acaaatcttcacaaactgctctaaatatttttcttctctct |
30514017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 27122953 - 27123193
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaactattcattgtaattgcttaaaattaccacaacaaaccatttttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27122953 |
atcatcaaccaacacaaataaatcccaccagcaccatcgattttggcattaactcttcattgtaattgcttgaaattaccacaacaaaccatttttgttc |
27123052 |
T |
|
| Q |
106 |
taatgaaatcaacaataacattcctttactagaacaagtaattatggcaagatgagatgagacaaaccttggttggttaccattccaacaacttaatgag |
205 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27123053 |
taatggaatcaacaataacattcctttactaaaacaagtaattatggcaagatgagatgagacaaaccttggctggttaccattccaacaacttaatgag |
27123152 |
T |
|
| Q |
206 |
acaaatcttcacaaac-gctctaaatatgtttcttctctct |
245 |
Q |
| |
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|||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
27123153 |
acaaatcttcacaaacagctctaaatatttttcttctctct |
27123193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 43129 - 42898
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaactattcattgtaattgcttaaaattaccacaacaaaccatttttgttc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
43129 |
atcatcaaccaacacaaataaaccccaccagcaccaccggttttggcattaactcttcattgtaattgcttgaaattaccacaacaaaccatttttgttc |
43030 |
T |
|
| Q |
106 |
taatgaaatcaacaataacattcctttactagaacaagtaattatggcaagatgagatgagacaaaccttggttggttaccattccaacaacttaatgag |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43029 |
taatggaatcaacaataacattcctttacaagaacaagtaattatggcaagatgagatgagacaa---------ggttaccattccaacaacttaatgag |
42939 |
T |
|
| Q |
206 |
acaaatcttcacaaac-gctctaaatatgtttcttctctct |
245 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
42938 |
acaaatcttcacaaactgctctaaatatttttcttctctct |
42898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 30780895 - 30780656
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaactattcattgtaattgcttaaaattaccacaacaaaccatttttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||| ||||||| ||||||| |||||||||||| |
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|
| T |
30780895 |
atcatcaaccaacacaaataaaccccaccagcaccaccaattttgacattaactcttcattgtaattgcttgaaattactacaacaa-ccatttttgttc |
30780797 |
T |
|
| Q |
106 |
taatgaaatcaacaataacattcctttactagaacaagtaattatggcaagatgagatgagacaaaccttggttggttaccattccaacaacttaatgag |
205 |
Q |
| |
|
| ||| ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| | |
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|
| T |
30780796 |
tgatggaatcaacaagaacactcctttactaggacaagtaattatggcaagatgagatgagacaaactttggctggttaccgttccaacaacttaatcac |
30780697 |
T |
|
| Q |
206 |
acaaatcttcacaaac-gctctaaatatgtttcttctctct |
245 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| |
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|
| T |
30780696 |
acaaatcttcacaaactgctctaaatatttttcttctctct |
30780656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 28090794 - 28090923
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaactattcattgtaattgcttaaaattaccacaacaaaccatttttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||| ||| |||| ||||||||| |
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|
| T |
28090794 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttggtattaactcttcattgtaattgcttgaaattaccataac-aaccctttttgttc |
28090892 |
T |
|
| Q |
106 |
taatgaaatcaacaataacattcctttacta |
136 |
Q |
| |
|
||||| ||||||||| |||| || ||||||| |
|
|
| T |
28090893 |
taatggaatcaacaagaacactcatttacta |
28090923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 42346471 - 42346439
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagca |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
42346471 |
atcatcaaccaacacaaataaaccccaccagca |
42346439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 37158154 - 37158024
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaact-attcattgtaattgcttaaaattaccacaacaaaccatttttgtt |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||| ||| |||| |||||||| |
|
|
| T |
37158154 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttggtattaactctttcattgtaattgcttgaaattaccataac-aaccctttttgtt |
37158056 |
T |
|
| Q |
105 |
ctaatgaaatcaacaataacattcctttacta |
136 |
Q |
| |
|
|||||| ||||||||| |||| || ||||||| |
|
|
| T |
37158055 |
ctaatggaatcaacaagaacactcatttacta |
37158024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 136
Target Start/End: Original strand, 16649841 - 16649970
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgattttagcattaactattcattgtaattgcttaaaattaccacaacaaaccatttttgttc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||||||| ||||||||| ||| |||| ||||||||| |
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|
| T |
16649841 |
atcatcaaccaacacaaataaaccccaccagcactatcgattttgacattaactcttcattgtaattgcttgaaattaccataac-aaccctttttgttc |
16649939 |
T |
|
| Q |
106 |
taatgaaatcaacaataacattcctttacta |
136 |
Q |
| |
|
||||| ||||||||| |||| || ||||||| |
|
|
| T |
16649940 |
taatggaatcaacaagaacactcatttacta |
16649970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 37543395 - 37543436
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgatt |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37543395 |
atcatcaaccaacacaaataaaccccaccagcaccaccgatt |
37543436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 46707531 - 46707572
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagcaccaccgatt |
47 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46707531 |
atcatcaatcaacacaaataaaccccaccagcaccaccgatt |
46707572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 43637552 - 43637584
Alignment:
| Q |
6 |
atcatcaaccaacacaaataaaccccaccagca |
38 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
43637552 |
atcatcaaccaacacaaataaaccccaccagca |
43637584 |
T |
|
Back To:
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