View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13781_low_4 (Length: 443)
Name: NF13781_low_4
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 138 - 439
Target Start/End: Original strand, 46932975 - 46933276
Alignment:
| Q |
138 |
cagttcacacccccctgactctttatctttctgtataatagtactctctaatattactactgcaatgtttcagcggctgacatggtgacagtacctatag |
237 |
Q |
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| T |
46932975 |
cagttcacacccccctgactctttatctttctgtataatagtactctctaatattactactgcaatgtttcagcggctgacatggtgacagtacctatag |
46933074 |
T |
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| Q |
238 |
tcctttatatttttctgattcatctgtgagtattactagtctcgtgaatccnnnnnnnnnnnnnnctgttctaaaacacttatttattaccactacctta |
337 |
Q |
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| T |
46933075 |
tcctttatatttttctgattcatctgtgagtattactagtctcgtgaatccttttttgtttttttctgttctaaaacacttatttattaccactacctta |
46933174 |
T |
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| Q |
338 |
ttcccttgttcatgttacgtgcatatttatgggaattgtatacannnnnnnnnnnnnnnatcttaatttaacaacaagacgaactaacccctctctctgc |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46933175 |
ttcccttgttcatgttacgtgcatatttatgggaattgtatacattttttaatttttttatcttaatttaacaacaagacgaactaacccctctctgtgc |
46933274 |
T |
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| Q |
438 |
tc |
439 |
Q |
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|| |
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| T |
46933275 |
tc |
46933276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 46932852 - 46932900
Alignment:
| Q |
18 |
aaatgacaagtatctggcaagttgtaaacaatcatgcatgcccttgttg |
66 |
Q |
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| T |
46932852 |
aaatgacaagtatctggcaagttgtaaacaatcatgcatgcccttgttg |
46932900 |
T |
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