View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13781_low_6 (Length: 375)
Name: NF13781_low_6
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 47624928 - 47625287
Alignment:
| Q |
1 |
aaacgattgcatgagactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttacacattgcaataccccaaaaaacgatattt |
100 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47624928 |
aaaccattgcatgaaactttatagtacagttatgaaatgtcatggtcatgacatagtttgttttgttttccacattgcaataccccaaaaaacgatattt |
47625027 |
T |
|
| Q |
101 |
agatcattgtccaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagcagcttaa |
200 |
Q |
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| T |
47625028 |
agatcattgtctaccacagcaaaacttgcaggcagcagagttaacttgaataatttgcacagacatataaacactaaacaacaataatctagcagcttaa |
47625127 |
T |
|
| Q |
201 |
acagctatagtaaaatcatgtcatgccactgagagtacagagtcatctcttaatattgaaggtaattggtaccttggagagctccagtgaaggaggaata |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47625128 |
acagctatagtaaaatcatgtcatgccactgacagtacagagtcatctcttaatattgaaggtaattgttaccttggagagctccagtgaaggaggaata |
47625227 |
T |
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| Q |
301 |
actatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625228 |
actatagagctgatcttcaacaggcacctctctgaagaatctttctccctcttgtctgtg |
47625287 |
T |
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