View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13781_low_8 (Length: 271)
Name: NF13781_low_8
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13781_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 27991175 - 27991422
Alignment:
| Q |
13 |
tcatcatgaaagcattcatacagtccactcatttcctttaatttcttaatgtctagactaattaattagacaaaacagcaaacttgatgtggtccataag |
112 |
Q |
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| T |
27991175 |
tcatcatgaaagcattcatacagtccactcatttcctttaatttcttcatgtctagactaattaattagacaaaacaacaaacttgatgtggtccataag |
27991274 |
T |
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| Q |
113 |
caacttgtgcttgtcaattcttccactgatagcttgatttaatttccaacaataaaaaacattagatatgtttatatatacatttcaatgtgaccatcaa |
212 |
Q |
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| T |
27991275 |
taacttgtgcttgtcaattcttccactgatagcttgatttaatttccaacaataaaaaacattagatatgtttatatatacatttcaatgtgaccatcaa |
27991374 |
T |
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| Q |
213 |
ccttcatacagaactaacaaaagtaaaagtgaactgtggaaatatttg |
260 |
Q |
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| T |
27991375 |
ccttcatacaaaactaacaaaagtaaaagtgaagtgtggaaatatttg |
27991422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 27983721 - 27983781
Alignment:
| Q |
116 |
cttgtgcttgtcaattcttccactgatagcttgatttaatttccaacaataaaaaacatta |
176 |
Q |
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| T |
27983721 |
cttgtgcttgtcaattcttccactgatagcttgctttaatttccagcaatcaacaacatta |
27983781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 27983610 - 27983702
Alignment:
| Q |
17 |
catgaaagcattcatacagtccactcatttcctttaatttcttaatgtctagactaattaattagacaaaacagcaaacttgatgtggtccataagcaac |
116 |
Q |
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| T |
27983610 |
catgaaagcattcatacggtccactcattttcttt-----cttgatctctagactaatta----gacaaaacaacaaa-ttgatgtggtccataagcaac |
27983699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 27983782 - 27983840
Alignment:
| Q |
199 |
aatgtgaccatcaaccttcatacagaactaacaaaagtaaaagtgaactgtggaaatat |
257 |
Q |
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| T |
27983782 |
aatgtgaccttcaacattcatacagaagcaacaaaaataaaagtgaagtgtgaaaatat |
27983840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 28001930 - 28001980
Alignment:
| Q |
200 |
atgtgaccatcaaccttcatacagaactaacaaaagtaaaagtgaactgtg |
250 |
Q |
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| T |
28001930 |
atgtgacaatcaacattcatacagaacgaacaaaaataaaagtgaagtgtg |
28001980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 27957969 - 27958018
Alignment:
| Q |
201 |
tgtgaccatcaaccttcatacagaactaacaaaagtaaaagtgaactgtg |
250 |
Q |
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| T |
27957969 |
tgtgaccatcaacattcatacagaagcaacaaaaataaaagtgaagtgtg |
27958018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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