View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13781_low_9 (Length: 263)

Name: NF13781_low_9
Description: NF13781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13781_low_9
NF13781_low_9
[»] chr7 (2 HSPs)
chr7 (10-257)||(22869428-22869675)
chr7 (10-257)||(22802919-22803180)
[»] chr1 (4 HSPs)
chr1 (157-255)||(11233814-11233912)
chr1 (10-102)||(38450363-38450454)
chr1 (10-102)||(38464214-38464305)
chr1 (17-63)||(31297620-31297666)
[»] chr3 (2 HSPs)
chr3 (153-263)||(3666788-3666897)
chr3 (10-63)||(3666981-3667033)
[»] chr5 (2 HSPs)
chr5 (12-151)||(25579537-25579676)
chr5 (38-75)||(14704921-14704958)
[»] chr6 (1 HSPs)
chr6 (10-151)||(20868121-20868264)
[»] chr4 (3 HSPs)
chr4 (169-251)||(1639262-1639344)
chr4 (10-57)||(223836-223882)
chr4 (10-57)||(37905045-37905091)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 22869675 - 22869428
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatgccttcttaaatacaaccatcaaggctaaaagagtaaatgattta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22869675 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatgccttcttaaatacaaccatcaaggctaaaagagtaaatgattta 22869576  T
Q  110 aagtaaaacaaatacttagaataagttaactcactaatacttcattcctgtaacaataccctccccttcaaacatcctcgtcctcaaggatgaataatca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22869575 aagtaaaacaaatacttagaataagttaactcactaatacttcattcctgtaacaataccctccccttcaaacatcctcgtcctcaaggatgaataatca 22869476  T
Q  210 caagtgccatgtttaagaggcaaagttttccatttgattagaacttta 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22869475 caagtgccatgtttaagaggcaaagttttccatttgattagaacttta 22869428  T

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Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 22803180 - 22802919
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatgccttcttaaatacaaccatcaaggctaaaagagtaaatgattta 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22803180 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcccaatgccttcttaaatacaaccatcaaggctaaaagagtaaatgattta 22803081  T
Q  110 aagtaaaacaaatacttagaataagttaactcactaat--------------acttcattcctgtaacaataccctccccttcaaacatcctcgtcctca 195  Q
     |||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||    
T  22803080 gagtaaaacaaatacttagaataagttaactcactaatacttgtttactaatacttcattcctgtaacaataccctccccttcaaacatcctcgtcctca 22802981  T
Q  196 aggatgaataatcacaagtgccatgtttaagaggcaaagttttccatttgattagaacttta 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22802980 aggatgaataatcacaagtgccatgtttaagaggcaaagttttccatttgattagaacttta 22802919  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 11233814 - 11233912
Alignment:
Q  157 ctgtaacaataccctccccttcaaacatcctcgtcctcaaggatgaataatcacaagtgccatgtttaagaggcaaagttttccatttgattagaactt 255  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||||||| ||||||| ||||||||||||    
T  11233814 ctgtaacaataccctccccttcaaacatccctgtcctcaaggatgaatgatcacaagttccatgtttaagaggcaaagctttccatctgattagaactt 11233912  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 38450454 - 38450363
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatg-ccttcttaaatacaaccatcaaggctaaaagagtaaa 102  Q
    |||||||| |||||||||||||||||| ||||||||||  |||||||||||||||| | |  |||||||||| | || ||| ||||||||||||    
T  38450454 agagagaataagataattgttgaaata-ttgattgatt-tcaaatgaggcacaatgtcatgtttaaatacaatcctcgaggttaaaagagtaaa 38450363  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 38464305 - 38464214
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatgcc-ttcttaaatacaaccatcaaggctaaaagagtaaa 102  Q
    |||||||| |||||||||||||||||| ||||||||||  |||||||||||||| |||    |||||||||||| || ||||||||||| ||||    
T  38464305 agagagaataagataattgttgaaata-ttgattgatt-tcaaatgaggcacaaggccaagtttaaatacaaccctcgaggctaaaagattaaa 38464214  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 31297620 - 31297666
Alignment:
Q  17 agaagataattgttgaaatatttgattgattaccaaatgaggcacaa 63  Q
    ||||||||||||||||||| |||||||||||  ||||||||| ||||    
T  31297620 agaagataattgttgaaatgtttgattgattctcaaatgaggtacaa 31297666  T

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Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 3666897 - 3666788
Alignment:
Q  153 attcctgtaacaataccctccccttcaaacatcctcgtcctcaaggatgaataatcacaagtgccatgtttaagaggcaaagttttccatttgattagaa 252  Q
    |||||||| | ||||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  3666897 attcctgtgataataccctccctttcaaacatccttgtcctcaaggatgac-aatcacaagtgccatgtttaaaaggcaaagctttccatttgagtagaa 3666799  T
Q  253 ctttagcatct 263  Q
    |||||||||||    
T  3666798 ctttagcatct 3666788  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 3667033 - 3666981
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaa 63  Q
    |||||| |||||||||||||||||||| |||||||||| |||||||||| ||||    
T  3667033 agagaggagaagataattgttgaaata-ttgattgattcccaaatgaggtacaa 3666981  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 151
Target Start/End: Complemental strand, 25579676 - 25579537
Alignment:
Q  12 agagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatgccttcttaaatacaaccatcaaggctaaaagagt-aaatgatttaa 110  Q
    ||||||||||||| || ||||||| ||||||| ||| ||||||| |||||||||||||||||||||||  |||||||| ||||||||| |||||| ||||    
T  25579676 agagaagaagatagtttttgaaatgtttgattaatt-ccaaatgtggcacaatgccttcttaaatacattcatcaaggttaaaagagtaaaatgacttaa 25579578  T
Q  111 agtaaaacaaatacttagaataagttaactcactaatactt 151  Q
    ||||| || |||||||| |||||  ||| ||||||||||||    
T  25579577 agtaagactaatacttaaaataacctaattcactaatactt 25579537  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 14704958 - 14704921
Alignment:
Q  38 ttgattgattaccaaatgaggcacaatgccttcttaaa 75  Q
    |||||||||||||||||||||||||||||||| |||||    
T  14704958 ttgattgattaccaaatgaggcacaatgcctttttaaa 14704921  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 20868264 - 20868121
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgaggcacaatgcc-ttcttaaatacaaccatcaaggctaaaagagt-aaatgatt 107  Q
    ||||||||||||||||||||| |||| |||||||||||  |||||||||||| | ||| |  ||||||||||| ||||||||||||||||| |||||| |    
T  20868264 agagagaagaagataattgttaaaatgtttgattgattgtcaaatgaggcaccaagccatatttaaatacaactatcaaggctaaaagagtaaaatgact 20868165  T
Q  108 taaagtaaaacaaatacttagaataagttaactcactaatactt 151  Q
    |||||||||||  || |||| |||||| ||| ||||||||||||    
T  20868164 taaagtaaaactgattcttaaaataagctaattcactaatactt 20868121  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 251
Target Start/End: Original strand, 1639262 - 1639344
Alignment:
Q  169 cctccccttcaaacatcctcgtcctcaaggatgaataatcacaagtgccatgtttaagaggcaaagttttccatttgattaga 251  Q
    ||||||||||||||||||| ||||||||||||||| | ||  |||| ||||| ||| |||| ||||| |||||||||| ||||    
T  1639262 cctccccttcaaacatccttgtcctcaaggatgaaaattccaaagtaccatgcttaggaggaaaagtcttccatttgagtaga 1639344  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 223882 - 223836
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgag 57  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||    
T  223882 agagagaagaagataattcttgaaat-gttgattgattaccaaatgag 223836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 37905091 - 37905045
Alignment:
Q  10 agagagaagaagataattgttgaaatatttgattgattaccaaatgag 57  Q
    |||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  37905091 agagagaataagataattgttaaaata-ttgattgattaccaaatgag 37905045  T

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