View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_11 (Length: 352)
Name: NF13782_high_11
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 160 - 336
Target Start/End: Complemental strand, 12686161 - 12685985
Alignment:
| Q |
160 |
gcacgaccgtgtgttttgtatgcctataatctggaaagtgcacgaccgtgcgttttatgttgccagcaatggttgttacaaaactcttgcaattcctagt |
259 |
Q |
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| T |
12686161 |
gcacgaccgtgtgttttgtatgcctataatctggaaaatgcacgaccgtgcgttttatgttgccagcaatggttgttacaaaactcttgcaattcctagt |
12686062 |
T |
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| Q |
260 |
ttaagacttgtaaatcatcttcaatgcattgtcagagatcttaggctataaataggtccattatcagacttgcaaat |
336 |
Q |
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| T |
12686061 |
ttaagacttgtaaatcatcttcaatgcattgtcagagatcttaggctataaataagtccattatcagacttgcaaat |
12685985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 12 - 164
Target Start/End: Complemental strand, 12693018 - 12692867
Alignment:
| Q |
12 |
ataggcggctggaaaaaacaaacgaccgtgcgtttattatgcacgattgtgcgcacgaaacgtatgagaaaggaagaaatggcagggagaaacgcacggt |
111 |
Q |
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| T |
12693018 |
ataggcagctggaaaaa-cacacgaccgtgcgtttattatgcacgattgtgcgcacgaaaagtatgagaaaggaagaaatggcagggagaaacgcacggt |
12692920 |
T |
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| Q |
112 |
ccgtgcattttgagagcacggctgtgtgttttagcgaagctggaaagtgcacg |
164 |
Q |
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| T |
12692919 |
ccgtgcattttgagagcacaactgtgtgttttagcaaagctggaaagtgcacg |
12692867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 315
Target Start/End: Complemental strand, 13540048 - 13539969
Alignment:
| Q |
236 |
tacaaaactcttgcaattcctagtttaagacttgtaaatcatcttcaatgcattgtcagagatcttaggctataaatagg |
315 |
Q |
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| T |
13540048 |
tacaaaactcttgcaattcctagtttaagacttgtaaatcaaattcaatgcattgcctgaggtcttaggctataaatagg |
13539969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 315
Target Start/End: Original strand, 13684426 - 13684505
Alignment:
| Q |
236 |
tacaaaactcttgcaattcctagtttaagacttgtaaatcatcttcaatgcattgtcagagatcttaggctataaatagg |
315 |
Q |
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| T |
13684426 |
tacaaaactcttgcaattcctagtttaagacttgtaaatcaaattcaatgcattgcctgaggtcttaggctataaatagg |
13684505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 23482374 - 23482434
Alignment:
| Q |
266 |
cttgtaaatcatcttcaatgcattgtcagagatcttaggctataaataggtccattatcag |
326 |
Q |
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| T |
23482374 |
cttgtaattcaccttcaatgaattgtctaagaccttaggctataaataggtccattatcag |
23482434 |
T |
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