View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13782_high_12 (Length: 341)

Name: NF13782_high_12
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13782_high_12
NF13782_high_12
[»] chr8 (11 HSPs)
chr8 (153-341)||(33714317-33714505)
chr8 (11-81)||(33714577-33714647)
chr8 (250-339)||(34522140-34522228)
chr8 (245-338)||(1469903-1469998)
chr8 (306-341)||(8799358-8799393)
chr8 (306-341)||(26820152-26820187)
chr8 (306-336)||(926440-926470)
chr8 (306-338)||(10437838-10437870)
chr8 (306-338)||(11119084-11119116)
chr8 (306-338)||(39392746-39392778)
chr8 (306-338)||(40728503-40728535)
[»] chr1 (5 HSPs)
chr1 (246-341)||(10199490-10199584)
chr1 (245-338)||(33527232-33527324)
chr1 (253-337)||(35017475-35017558)
chr1 (306-338)||(15360847-15360879)
chr1 (305-341)||(30815717-30815753)
[»] chr3 (6 HSPs)
chr3 (285-335)||(34958261-34958310)
chr3 (306-339)||(20267108-20267141)
chr3 (304-341)||(25195375-25195412)
chr3 (306-335)||(34954036-34954065)
chr3 (250-278)||(46434752-46434780)
chr3 (306-338)||(49587001-49587033)
[»] chr7 (4 HSPs)
chr7 (245-336)||(12110253-12110343)
chr7 (246-278)||(32156887-32156919)
chr7 (250-338)||(41668195-41668282)
chr7 (250-338)||(41668873-41668960)
[»] chr4 (8 HSPs)
chr4 (245-338)||(22666811-22666906)
chr4 (254-338)||(22662332-22662418)
chr4 (306-341)||(20936084-20936119)
chr4 (247-338)||(38478642-38478727)
chr4 (250-332)||(6466137-6466218)
chr4 (256-337)||(53422266-53422346)
chr4 (306-338)||(31642075-31642107)
chr4 (306-338)||(51044544-51044576)
[»] scaffold0590 (1 HSPs)
scaffold0590 (306-341)||(1156-1191)
[»] scaffold0275 (1 HSPs)
scaffold0275 (306-341)||(2784-2819)
[»] chr5 (8 HSPs)
chr5 (306-341)||(35135744-35135779)
chr5 (306-341)||(37063156-37063191)
chr5 (256-326)||(9106729-9106798)
chr5 (239-324)||(32927968-32928052)
chr5 (245-278)||(38105023-38105056)
chr5 (306-338)||(14295459-14295491)
chr5 (306-338)||(28586851-28586883)
chr5 (306-338)||(29117015-29117047)
[»] chr2 (15 HSPs)
chr2 (306-341)||(17952783-17952818)
chr2 (285-338)||(40401202-40401256)
chr2 (306-336)||(43259787-43259817)
chr2 (306-335)||(787284-787313)
chr2 (300-341)||(6988062-6988103)
chr2 (285-338)||(43530196-43530248)
chr2 (242-278)||(626370-626406)
chr2 (250-302)||(1977137-1977189)
chr2 (250-278)||(12140448-12140476)
chr2 (306-338)||(26857195-26857227)
chr2 (289-341)||(31740041-31740093)
chr2 (306-338)||(33192146-33192178)
chr2 (250-278)||(39621866-39621894)
chr2 (306-338)||(39621906-39621938)
chr2 (306-338)||(41407028-41407060)
[»] chr6 (3 HSPs)
chr6 (305-339)||(30784509-30784543)
chr6 (251-336)||(33080669-33080753)
chr6 (306-338)||(30865435-30865467)
[»] scaffold0022 (1 HSPs)
scaffold0022 (306-338)||(143146-143178)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 153 - 341
Target Start/End: Complemental strand, 33714505 - 33714317
Alignment:
Q  153 ggccatattggataacagtaattttattgaaaatcaaggttaatcacgttaaaattcagtagatggtcaataagttgtgacacctaatatgaccctattt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33714505 ggccatattggataacagtaattttattgaaaatcaaggttaatcacgttaaaattcagtagatggtcaataagttgtgacaccaaatatgaccctattt 33714406  T
Q  253 ggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaactatt 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33714405 ggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaactatt 33714317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 33714647 - 33714577
Alignment:
Q  11 atcatcattcaagctagctaatcttctgcaaagcacaggataaggttttccttcttcaacacggcgataat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33714647 atcatcattcaagctagctaatcttctgcaaagcacaggataaggttttccttcttcaacacggcgataat 33714577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 250 - 339
Target Start/End: Complemental strand, 34522228 - 34522140
Alignment:
Q  250 tttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaacta 339  Q
    |||||||||| ||||||||||||| ||||||  | |||| |||||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  34522228 tttggataaaaaacttattttgcaacttacagcataagcgcttatgaataagctattt-ctatgacacaagataaaataaagtcaaacta 34522140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 1469903 - 1469998
Alignment:
Q  245 ccctatttggataaacaacttattttgcagcttaca-caaa-aagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    |||||||||| |||||||||||||||||||||||   || | ||||||||||||| ||  ||||||||||| ||||||||| ||||||||||||||    
T  1469903 ccctatttggttaaacaacttattttgcagcttattgcatataagcacttatgaacaagctattttctatatcacaagatacaataaagtcaaact 1469998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 8799358 - 8799393
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8799358 tttctataacaaaagataaaataaagtcaaactatt 8799393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 26820152 - 26820187
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26820152 tttctataacaaaagataaaataaagtcaaactatt 26820187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 926440 - 926470
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaa 336  Q
    |||||||||||||||||||||||||||||||    
T  926440 tttctataacacaagataaaataaagtcaaa 926470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 10437838 - 10437870
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  10437838 tttctataacaaaagataaaataaagtcaaact 10437870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 11119116 - 11119084
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  11119116 tttctataacaaaagataaaataaagtcaaact 11119084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 39392778 - 39392746
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  39392778 tttctataacaaaagataaaataaagtcaaact 39392746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 40728535 - 40728503
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  40728535 tttctataacaaaagataaaataaagtcaaact 40728503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 341
Target Start/End: Complemental strand, 10199584 - 10199490
Alignment:
Q  246 cctatttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaactatt 341  Q
    |||| |||| ||||||||||||||||||||||| |  | || |||||||  || ||||  |||||||||| |||||||||||||||||||||||||    
T  10199584 cctacttgggtaaacaacttattttgcagcttatagcataaacacttatagat-aagttatttctataacccaagataaaataaagtcaaactatt 10199490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 33527324 - 33527232
Alignment:
Q  245 ccctatttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    |||| |||||||||||| |||||||||||||||| |  | |||| |||||||||||  || |||||| |||| ||||||||||| |||||||||    
T  33527324 ccctgtttggataaacagcttattttgcagcttagagcataagcgcttatgaataagcta-tttctaaaacaaaagataaaatacagtcaaact 33527232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 337
Target Start/End: Original strand, 35017475 - 35017558
Alignment:
Q  253 ggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaac 337  Q
    |||||||||||||||||||| | || ||  | ||| ||||||||||||  |||||| ||||| ||||||||||||||||||||||    
T  35017475 ggataaacaacttattttgcggttttcagcataagaacttatgaataagctatttt-tataatacaagataaaataaagtcaaac 35017558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 15360847 - 15360879
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  15360847 tttctataacaaaagataaaataaagtcaaact 15360879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 30815753 - 30815717
Alignment:
Q  305 ttttctataacacaagataaaataaagtcaaactatt 341  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  30815753 ttttctataacaaaagataaaataaagttaaactatt 30815717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 34958261 - 34958310
Alignment:
Q  285 aagcacttatgaataaagtattttctataacacaagataaaataaagtcaa 335  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  34958261 aagcacttatgaataaactattt-ctataacacaagataaaataaagtcaa 34958310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 20267108 - 20267141
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaacta 339  Q
    ||||||||||| ||||||||||||||||||||||    
T  20267108 tttctataacaaaagataaaataaagtcaaacta 20267141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 341
Target Start/End: Original strand, 25195375 - 25195412
Alignment:
Q  304 attttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  25195375 attttctataacaaaagataaaataaagtcaaattatt 25195412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 34954036 - 34954065
Alignment:
Q  306 tttctataacacaagataaaataaagtcaa 335  Q
    ||||||||||||||||||||||||||||||    
T  34954036 tttctataacacaagataaaataaagtcaa 34954065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Complemental strand, 46434780 - 46434752
Alignment:
Q  250 tttggataaacaacttattttgcagctta 278  Q
    |||||||||||||||||||||||||||||    
T  46434780 tttggataaacaacttattttgcagctta 46434752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 49587033 - 49587001
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  49587033 tttctataacaaaagataaaataaagtcaaact 49587001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 336
Target Start/End: Original strand, 12110253 - 12110343
Alignment:
Q  245 ccctatttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaa 336  Q
    |||| ||| |||||||| |||| |||||| |||| |  | ||||||||||||||||  ||||| |||| |||||||||||||||||||||||    
T  12110253 ccctgtttcgataaacagcttaatttgcaacttatagcataagcacttatgaataacctattt-ctattacacaagataaaataaagtcaaa 12110343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 32156887 - 32156919
Alignment:
Q  246 cctatttggataaacaacttattttgcagctta 278  Q
    ||||||||||||||||||||| |||||||||||    
T  32156887 cctatttggataaacaacttaatttgcagctta 32156919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 41668282 - 41668195
Alignment:
Q  250 tttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    |||||||||||| |||||||||||||  | |  | |||| |||||||||||  || |||||||||| ||||||||||||  ||||||||    
T  41668282 tttggataaacagcttattttgcagccgatagcataagcgcttatgaataagcta-tttctataacccaagataaaatagtgtcaaact 41668195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 41668960 - 41668873
Alignment:
Q  250 tttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    |||||||||||| |||||||||||||  | |  | |||| |||||||||||  || |||||||||| ||||||||||||  ||||||||    
T  41668960 tttggataaacagcttattttgcagccgatagcataagcgcttatgaataagcta-tttctataacccaagataaaatagtgtcaaact 41668873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 338
Target Start/End: Complemental strand, 22666906 - 22666811
Alignment:
Q  245 ccctatttggataaacaacttattttgcagcttacac---aaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    |||| ||| ||||||||||||||||||||| ||| |    || |||| |||||||||||| | |||||| |||||||||||||||||| ||||||||    
T  22666906 ccctgtttagataaacaacttattttgcagattatagtataataagctcttatgaataaact-ttttctgtaacacaagataaaataaggtcaaact 22666811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 22662418 - 22662332
Alignment:
Q  254 gataaacaacttattttgcagcttacac---aaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||||||||||||| ||| |    || |||| |||||||||||| | |||||| |||||||||||||||||| ||||||||    
T  22662418 gataaacaacttattttgcagattatagtataataagctcttatgaataaact-ttttctgtaacacaagataaaataaggtcaaact 22662332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 20936119 - 20936084
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20936119 tttctataacaaaagataaaataaagtcaaactatt 20936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 38478642 - 38478727
Alignment:
Q  247 ctatttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||||||||||||| ||| ||| ||||      || |||||||||||  ||||| |||||||||||||||| |||||||||||||    
T  38478642 ctatttggataaacaacttatgttgtagcatacat-----gcgcttatgaataagctattt-ctataacacaagataagataaagtcaaact 38478727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 6466218 - 6466137
Alignment:
Q  250 tttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagt 332  Q
    |||||||||||||||| |||||||||||| |    |||| ||||||||| ||||  ||| ||||||||||||| |||||||||    
T  6466218 tttggataaacaacttcttttgcagcttatagcgtaagcgcttatgaat-aagttgtttatataacacaagatcaaataaagt 6466137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 53422266 - 53422346
Alignment:
Q  256 taaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaac 337  Q
    |||| |||| ||||||||||||| |  | |||| |||||||||||  ||||| ||| |||||||||||||||||| ||||||    
T  53422266 taaagaactaattttgcagcttatagcataagctcttatgaataagctattt-ctacaacacaagataaaataaattcaaac 53422346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 31642075 - 31642107
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||| |||||||||||||||||||||||||||    
T  31642075 tttctgtaacacaagataaaataaagtcaaact 31642107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 51044576 - 51044544
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  51044576 tttctataacaaaagataaaataaagtcaaact 51044544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 1191 - 1156
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  1191 tttctataacaaaagataaaataaagtcaaactatt 1156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Original strand, 2784 - 2819
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2784 tttctataacaaaagataaaataaagtcaaactatt 2819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 35135779 - 35135744
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  35135779 tttctataacaaaagataaaataaagtcaaactatt 35135744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 37063191 - 37063156
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37063191 tttctataacaaaagataaaataaagtcaaactatt 37063156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 326
Target Start/End: Original strand, 9106729 - 9106798
Alignment:
Q  256 taaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaa 326  Q
    ||||||||||||||||||||||| |  | ||||| |||||||| ||| | |||||||||| ||||||||||    
T  9106729 taaacaacttattttgcagcttaaagcataagcatttatgaat-aagcaatttctataacccaagataaaa 9106798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 324
Target Start/End: Original strand, 32927968 - 32928052
Alignment:
Q  239 atatgaccctatttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataa 324  Q
    ||||| |||| |||| |||||||||||| ||||||||||| |  | |||| || ||| |||||||| ||||||||||| |||||||    
T  32927968 atatggccctgtttgaataaacaacttaatttgcagcttatatcataagcgctaatgtataaagta-tttctataacaaaagataa 32928052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 38105056 - 38105023
Alignment:
Q  245 ccctatttggataaacaacttattttgcagctta 278  Q
    |||| |||||||||||||||||||||||||||||    
T  38105056 ccctgtttggataaacaacttattttgcagctta 38105023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 14295459 - 14295491
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  14295459 tttctataacaaaagataaaataaagtcaaact 14295491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 28586883 - 28586851
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  28586883 tttctataacaaaagataaaataaagtcaaact 28586851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 29117047 - 29117015
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  29117047 tttctataacaaaagataaaataaagtcaaact 29117015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 341
Target Start/End: Complemental strand, 17952818 - 17952783
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17952818 tttctataacaaaagataaaataaagtcaaactatt 17952783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 40401256 - 40401202
Alignment:
Q  285 aagcacttatgaataaagtattttc-tataacacaagataaaataaagtcaaact 338  Q
    ||||||||||||||||  ||| ||| ||| |||||||||||||||||||||||||    
T  40401256 aagcacttatgaataagctatattcctattacacaagataaaataaagtcaaact 40401202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 336
Target Start/End: Original strand, 43259787 - 43259817
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaa 336  Q
    |||||||||||||||||||||||||||||||    
T  43259787 tttctataacacaagataaaataaagtcaaa 43259817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 335
Target Start/End: Original strand, 787284 - 787313
Alignment:
Q  306 tttctataacacaagataaaataaagtcaa 335  Q
    ||||||||||||||||||||||||||||||    
T  787284 tttctataacacaagataaaataaagtcaa 787313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 6988062 - 6988103
Alignment:
Q  300 aagtattttctataacacaagataaaataaagtcaaactatt 341  Q
    |||| |||||||||||| ||||||||||||||||||| ||||    
T  6988062 aagttttttctataacaaaagataaaataaagtcaaattatt 6988103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 338
Target Start/End: Complemental strand, 43530248 - 43530196
Alignment:
Q  285 aagcacttatgaataaagtattttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||||||||  ||||| |||||  |||||||||||||||||||||||    
T  43530248 aagcacttatgaataagctattt-ctataggacaagataaaataaagtcaaact 43530196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 626406 - 626370
Alignment:
Q  242 tgaccctatttggataaacaacttattttgcagctta 278  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  626406 tgaccctgtttggataaacaacttattttgtagctta 626370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 1977189 - 1977137
Alignment:
Q  250 tttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaag 302  Q
    ||||||||||||||| | |||||||||||||  | |||| |||||||||||||    
T  1977189 tttggataaacaactaactttgcagcttacaacataagcgcttatgaataaag 1977137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 12140448 - 12140476
Alignment:
Q  250 tttggataaacaacttattttgcagctta 278  Q
    |||||||||||||||||||||||||||||    
T  12140448 tttggataaacaacttattttgcagctta 12140476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 26857227 - 26857195
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    |||||||||||||||||||||| ||||||||||    
T  26857227 tttctataacacaagataaaatgaagtcaaact 26857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 31740093 - 31740041
Alignment:
Q  289 acttatgaataaagtattttctataacacaagataaaataaagtcaaactatt 341  Q
    ||||||| ||||||   ||||||||||  ||||||||||||||||||||||||    
T  31740093 acttatgtataaagctatttctataactaaagataaaataaagtcaaactatt 31740041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 33192146 - 33192178
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  33192146 tttctataacataagataaaataaagtcaaact 33192178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 39621866 - 39621894
Alignment:
Q  250 tttggataaacaacttattttgcagctta 278  Q
    |||||||||||||||||||||||||||||    
T  39621866 tttggataaacaacttattttgcagctta 39621894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 39621906 - 39621938
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    |||||||||||||| ||||||||||||||||||    
T  39621906 tttctataacacaaaataaaataaagtcaaact 39621938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 41407028 - 41407060
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||||||||||||||||||| |||||    
T  41407028 tttctataacacaagataaaataaagttaaact 41407060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 339
Target Start/End: Original strand, 30784509 - 30784543
Alignment:
Q  305 ttttctataacacaagataaaataaagtcaaacta 339  Q
    |||||||||||| ||||||||||||||||||||||    
T  30784509 ttttctataacaaaagataaaataaagtcaaacta 30784543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 33080753 - 33080669
Alignment:
Q  251 ttggataaacaacttattttgcagcttacacaaaaagcacttatgaataaagtattttctataacacaagataaaataaagtcaaa 336  Q
    ||||||||| |  ||||||||||||||| |  | |||||||||||||| |||  |||||||||||||| |||||| | ||||||||    
T  33080753 ttggataaatagtttattttgcagcttatagcataagcacttatgaat-aagctttttctataacacaggataaattcaagtcaaa 33080669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 30865435 - 30865467
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    ||||||||||| |||||||||||||||||||||    
T  30865435 tttctataacaaaagataaaataaagtcaaact 30865467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 143178 - 143146
Alignment:
Q  306 tttctataacacaagataaaataaagtcaaact 338  Q
    |||||||||||||||||||||||| ||||||||    
T  143178 tttctataacacaagataaaataatgtcaaact 143146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University