View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_13 (Length: 340)
Name: NF13782_high_13
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 14260397 - 14260093
Alignment:
| Q |
18 |
atagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaattcaacaattgattgagaatattacagttggacagat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14260397 |
atagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttacaaattcaacaattgattgagaatattacagttggacagat |
14260298 |
T |
|
| Q |
118 |
tctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
14260297 |
tctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactctcatatatacccttgtacggt |
14260198 |
T |
|
| Q |
218 |
gaaaatgttttgtccatcatcctgaatataaaaaataaattgaatagatttttnnnnnnnntaatatctttttatacattgtttataataaaaataaacg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14260197 |
gaaaatgttttgtccatcatcctgaatataaaaaataaattgaatagatttttataaaaaataatatctttttatacattgtttataataaaaataaacg |
14260098 |
T |
|
| Q |
318 |
gtaga |
322 |
Q |
| |
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||||| |
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| T |
14260097 |
gtaga |
14260093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 22136129 - 22136279
Alignment:
| Q |
18 |
atagacattgattcctgcaaattctcaaattagataaagaaatatacaacataaatttgtaaattcaacaattgattgagaatattacagttggacagat |
117 |
Q |
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|||| ||| |||||||||||||||||| |||||| |||||||| || ||||||||||| |||||| || ||||| ||||||| ||||| | ||||||| |
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| T |
22136129 |
atagccatcgattcctgcaaattctcacattaga-aaagaaatgtataacataaatttataaattaaataattggttgagaaaattaccactagacagat |
22136227 |
T |
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| Q |
118 |
tctaagtgcagatagagtggttactcctattgagtacatccattgatctata |
169 |
Q |
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| T |
22136228 |
tctaagtgcaaatatagtggttactactgttgagtacacctattaatctata |
22136279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 22145724 - 22145805
Alignment:
| Q |
169 |
attatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaa |
250 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
22145724 |
attatgaaaccaagtatcttcacgactttcatatatagccttgtaaagtgaaaatgttttgtccaacatcttgaatataaaa |
22145805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 7558952 - 7558852
Alignment:
| Q |
158 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
257 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||||| |||| |||||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
7558952 |
cattgatctatattatgaaaccaattatcttcatgactttcatatatagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat |
7558853 |
T |
|
| Q |
258 |
t |
258 |
Q |
| |
|
| |
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|
| T |
7558852 |
t |
7558852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 19723967 - 19723867
Alignment:
| Q |
158 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
257 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| |||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
19723967 |
cattaatctatattatgaaaccaattatcttcacgactttcatatatagtattgtaaagtgaaaatgttttgtccaagatcatgaatataaaacataaat |
19723868 |
T |
|
| Q |
258 |
t |
258 |
Q |
| |
|
| |
|
|
| T |
19723867 |
t |
19723867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 258
Target Start/End: Original strand, 8771764 - 8771864
Alignment:
| Q |
158 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
257 |
Q |
| |
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|||||||||||||||||||||||| | ||||| |||||||||||| | |||| |||||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
8771764 |
cattgatctatattatgaaaccaattatcttcatgactttcatataaagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat |
8771863 |
T |
|
| Q |
258 |
t |
258 |
Q |
| |
|
| |
|
|
| T |
8771864 |
t |
8771864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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