View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_14 (Length: 339)
Name: NF13782_high_14
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 38390791 - 38390529
Alignment:
| Q |
8 |
agcaaaggaagaagaatttataggcttgtggacagttagaataacacctccgtatttatcttcttccacactcattttttcttcttctacttcttcgata |
107 |
Q |
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| T |
38390791 |
agcaaaggaagaagaatccataggcttgtggacagttagaataacacctccgtatttatcttcttccacactcattttttcttcttctacttcttcgata |
38390692 |
T |
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| Q |
108 |
accttttcatccacaattgcctcagacatactatgtatcaagaatgaaacactctcttaattctaataatgatgagatgaaatgaaatgatcacttaaaa |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38390691 |
accttttcatcctcaattgcctcagacatactatgtatcaagaatgaaacactctcttaattctaataatgatgagatgaaatgaaatgatcacttaaaa |
38390592 |
T |
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| Q |
208 |
aatatacgatgatcnnnnnnnnatcttcctgttcttaaatagaatcggcaatacacgttttta |
270 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38390591 |
aatatacgatgatcttttttttctcttcctgttcttaaatagaatcggcaatacacgttttta |
38390529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 38390502 - 38390450
Alignment:
| Q |
268 |
ttagctcgaaaatgctatgaatttgaacgaagtagaattcgtcaaagtatatc |
320 |
Q |
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| T |
38390502 |
ttagctcgaaaatgctatgaatttgaacgaagtagaattcgtcaaagtatatc |
38390450 |
T |
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