View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_18 (Length: 320)
Name: NF13782_high_18
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 42392805 - 42393100
Alignment:
| Q |
8 |
agattatactagcattgagtgctgaatctagattcccttgatcaatattcatatgataggtggtttctagggtagagaagtgtctcatatggtgtatgtc |
107 |
Q |
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| T |
42392805 |
agattatactagcattgagcgctgaatctagattcccttgatcaatattcatatgataggtggtttctagggtagagaagtgtctcatatggtgtatgtt |
42392904 |
T |
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| Q |
108 |
agacaaatacttgaaaattgttaaaaactccagcaatgataaatggtgctctccgtaagtagaagctcattgaattgctattcttaacaatattgaagtt |
207 |
Q |
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| T |
42392905 |
agacaaatacttgaaaattgttaaaaactctagcaatgatcaatggtgctctccgtaagtagaagctcgttgaattgctattcttaacaacattgaagtt |
42393004 |
T |
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| Q |
208 |
ttgaacaattttcaagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatattgtaatatgaagagtgaatatagt |
303 |
Q |
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| T |
42393005 |
ttgaacaattttcaagcatcaacaatcatagaatacacacgacactttccctccctatcaattaccctatatggtaatatgaatagtgaatatagt |
42393100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 42376447 - 42376496
Alignment:
| Q |
199 |
attgaagttttgaacaatttt-caagcatcaacaatcatagaatacacac |
247 |
Q |
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| T |
42376447 |
attgaagttttgaacaattttacaagcatcaacaatcgtagaatacacac |
42376496 |
T |
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