View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13782_high_3 (Length: 456)
Name: NF13782_high_3
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_3 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 42519520 - 42519087
Alignment:
| Q |
17 |
aagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtac |
116 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42519520 |
aagaatatccaggaaaattcaccattagggtgttcatcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtac |
42519421 |
T |
|
| Q |
117 |
aatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatga |
216 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42519420 |
aatattctaatttattttcttcttttttccatttaagtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatga |
42519321 |
T |
|
| Q |
217 |
taatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagttctttccagatgtttacgctaagcagctaaacattaagcctgcaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42519320 |
taatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagttctttccagatgtttatgctaagcagctaaacattaagcctgcaga |
42519221 |
T |
|
| Q |
317 |
taatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaact |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42519220 |
taatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccactgtaact |
42519121 |
T |
|
| Q |
417 |
agaatctttggaagacgtcttaccatgctctctg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42519120 |
agaatctttggaagacgtcttaccatgctctctg |
42519087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 1241288 - 1240866
Alignment:
| Q |
17 |
aagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtac |
116 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |||||||| |||||||| || |||||||||||| || |||||||||||| |||||||||| |
|
|
| T |
1241288 |
aagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttgaaggcttaatcttcggctatgatcttggcctttcaggtac |
1241189 |
T |
|
| Q |
117 |
aatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatga |
216 |
Q |
| |
|
|||||||| | ||| ||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
1241188 |
aatattctcatttt--------------ccaattaagtgtttgccaaa-tatgtctcaagaattgttcatatgacaataattttctgattaattacatga |
1241104 |
T |
|
| Q |
217 |
taatgaattaatgtataggtggagttacggcaatggatccat----tcttaatgaagttctttccagatgtttacgctaagcagctaaacattaagcctg |
312 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
1241103 |
taaacaattaatgtataggtggagttacggcaatggatccatccattcttgctgaagttctttccagatgtttaggctaaggagctaaacattaagccta |
1241004 |
T |
|
| Q |
313 |
cagataatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgt |
412 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1241003 |
ccgataatcaatactgcaaattcgacagtcagacactaacgttgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgc |
1240904 |
T |
|
| Q |
413 |
aactagaatctttggaagacgtcttaccatgctctctg |
450 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1240903 |
aactagaatctttggaagacatcttaccatgctctctg |
1240866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 443
Target Start/End: Original strand, 42550903 - 42550991
Alignment:
| Q |
355 |
tgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaactagaatctttggaagacgtcttaccatg |
443 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||| || || ||||| |||||||| |||||| || |||||||| ||||| |||||| |
|
|
| T |
42550903 |
tgtttacctcctctttgtatttggctgctcttgtagcatcacttggggcatccacagtaactcgatcgtttggaaggcgtctcaccatg |
42550991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 41972917 - 41972499
Alignment:
| Q |
17 |
aagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtac |
116 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
41972917 |
aagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcatttcaggtac |
41972818 |
T |
|
| Q |
117 |
aatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatga |
216 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
41972817 |
aatattctcatttt--------------ccattgaagtgtttgacaaaatatgtctcaagaattgttcatatgacaataattttctgattaattacatga |
41972732 |
T |
|
| Q |
217 |
taatgaattaatgtataggtggagttacggcaatggatccattcttaatgaagttctttccagatgtttacgctaagcagctaaacattaagcctgcaga |
316 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| | || |
|
|
| T |
41972731 |
taaacaattaatgtataggtggagttacggcaatggatccattcttgctgaagttctttccagatgtttaggctaaggagctaaacattaagcctacgga |
41972632 |
T |
|
| Q |
317 |
taatcaatactgcaaattcgacagtcagacactaactctgtttacatcctctttgtatttggccgctcttgtggcttctcttggagcatccaccgtaact |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41972631 |
taatcaatactgcaaattcgacagtcagacact-acgttgtttacatcctctttgtatttggccgctcttgtggattctcttggagcatccaccgtaact |
41972533 |
T |
|
| Q |
417 |
agaatctttggaagacgtcttaccatgctctctg |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
41972532 |
agaatctttggaagacgtcttaccatgctctctg |
41972499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 225 - 1
Alignment:
| Q |
17 |
aagaatatccaggaaaattcacctttagggtgttcatcatttgcatgactgcagcatgtggaggcttaatctttggttatgatcttggcatttcaggtac |
116 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
225 |
aagaatatccgggaaaactcacctttagggtgttcatcgcttgcatgattgcagcatttggaggcttaatcttcggctatgatcttggcatttcaggtac |
126 |
T |
|
| Q |
117 |
aatattctaannnnnnnnnnnnnnnnnnccatttaagtgtttgacaaaatatgtctcaagaattgttcatgtgacaataattttctgattaatgacatga |
216 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
125 |
aatattctcatttt--------------ccattgaagtgtttgacaaaatatgtctcaagaattgttcatatgacaataattttctgattaattacatga |
40 |
T |
|
| Q |
217 |
taatgaattaatgtataggtggagttacggcaatggatc |
255 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39 |
taaacaattaatgtataggtggagttacggcaatggatc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University