View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13782_high_32 (Length: 228)
Name: NF13782_high_32
Description: NF13782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13782_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 35344666 - 35344441
Alignment:
| Q |
1 |
aatgatgtatatatttttcttaattttatccttgtatcctaattgaataacaggaaatgttaaagtggatgacaagttttttcatacaaattgcacgact |
100 |
Q |
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| T |
35344666 |
aatgatgtatatatttttcttaattttatccttttatcctaattgaaaaacaggaaatgataaagtggacgacaagttttttcgtgcaaattgcacgact |
35344567 |
T |
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| Q |
101 |
tggtttgtgt--ttattatttgaggaggggtgtatgttgcgaatatatttttcgcacaaaaggcatgaacggtggatgacgcactgaaagaagctcacag |
198 |
Q |
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| T |
35344566 |
tagtttgtgtgtttattatttgaggaggggtgtatgttgcgaatatatttttcgcacaaaaggcatgaacggtggatgacacactgaaagaagctcacag |
35344467 |
T |
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| Q |
199 |
acttagaaacgtacaagttatgggcc |
224 |
Q |
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| T |
35344466 |
acttataaacgtacaagttatgggcc |
35344441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 35349344 - 35349154
Alignment:
| Q |
3 |
tgatgtatatatttttcttaattttatccttgtatcctaattgaataacaggaaatgttaaagtggatgacaagttttttcatacaaattgcacgacttg |
102 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| || ||||||| ||||||| | |||||||||||| | ||||||||||||||| |
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| T |
35349344 |
tgatgtatatatttttctcaattttatccttgtatcctaattgaaaaag-ggaaatgataaagtgtacgacaagttttttg-tgcaaattgcacgactta |
35349247 |
T |
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| Q |
103 |
gtttgtgt--ttattatttgaggaggggtgtatgttgcgaatatatttttcgcacaaaaggcatgaacggtggatgacgcactgaaagaagct |
193 |
Q |
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| T |
35349246 |
gtttgtgtgcttattatttgtggagtgctaaatggtgcgaatatatttttcgcacaaaatgtacgaacggtggatgacgcgctgaaagaagct |
35349154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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